View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_60 (Length: 268)
Name: NF16240_low_60
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_60 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13219505 - 13219764
Alignment:
| Q |
1 |
ctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctca |
100 |
Q |
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| T |
13219505 |
ctgcttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggatttattatgacaggggcttttgctca |
13219604 |
T |
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| Q |
101 |
tggagcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccattta |
200 |
Q |
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| T |
13219605 |
tggagcgatattttttattcgggattacaatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccattta |
13219704 |
T |
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| Q |
201 |
agttgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgtc |
260 |
Q |
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| T |
13219705 |
agttgggccagcctatttctggggttccatactttgggactttatgtccataatgatgtc |
13219764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 47842098 - 47842150
Alignment:
| Q |
21 |
caagactttactactcaagctgcgttatatactcatcatcaatacattgcagg |
73 |
Q |
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| T |
47842098 |
caagactttactactcaaactgcgttatatactcatcatcaatacattgcagg |
47842150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 47842174 - 47842226
Alignment:
| Q |
16 |
tagcacaagactttactactcaagctgcgttatatactcatcatcaatacatt |
68 |
Q |
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| T |
47842174 |
tagcacaggattttactactcaagctgcgttatatactcatcatcaatacatt |
47842226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 47842228 - 47842288
Alignment:
| Q |
89 |
ggcttttgctcatggagcgatattttttattcgcgattataatcccgaacagaatgaggat |
149 |
Q |
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| T |
47842228 |
ggcttttgcttatggagcgatattctttattcgagattgcaatcccgaatagaatgaggat |
47842288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 10996421 - 10996673
Alignment:
| Q |
4 |
cttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatgg |
103 |
Q |
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| T |
10996421 |
cttatgcgtttatagcgcaagactttacagctcaagctgcggtatatactcatcatcaattcattgcaggatttattatgacatgagcttttgctcatgg |
10996520 |
T |
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| Q |
104 |
agcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagt |
203 |
Q |
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| T |
10996521 |
aacgatattttt-atttgagattacaatcccgaacataatgagaataatgtattggcag--atgttagagcacaaagaagctatcatatcccatttaagt |
10996617 |
T |
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| Q |
204 |
tgggccagcctatttctggggttccatactttgggactttatgtccatgatgatgt |
259 |
Q |
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| T |
10996618 |
tgagccatcctatttctagggttccatactttgggactttatgtccataatgatgt |
10996673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 3065837 - 3065875
Alignment:
| Q |
32 |
tactcaagctgcgttatatactcatcatcaatacattgc |
70 |
Q |
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| T |
3065837 |
tactcaagctgccttatatagtcatcatcaatacattgc |
3065875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 247
Target Start/End: Complemental strand, 238201 - 237958
Alignment:
| Q |
4 |
cttatgcgtttatagcacaagactttactactcaagctgcgttatatactcatcatcaatacattgcaggctttattatgacaggggcttttgctcatgg |
103 |
Q |
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| T |
238201 |
cttatgcattcatagcacaagactttactactcaagctgctttatatactcatcaccaatatattgcggggttcatcatgacaggggcttttgctcatgg |
238102 |
T |
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| Q |
104 |
agcgatattttttattcgcgattataatcccgaacagaatgaggataatgtattggcaagaatgttagagcacaaagaagctatcatatcccatttaagt |
203 |
Q |
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| T |
238101 |
agctatttttttcattagggattacaatccggaacagaatgaggataatgtattggcaagaatgttagaccataaagaagctatcatatctcatttaagt |
238002 |
T |
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| Q |
204 |
tgggccagcctatttctggggttccatactttgggactttatgt |
247 |
Q |
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| T |
238001 |
tgggctagcctctttctaggattccataccttgggcctttatgt |
237958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 18013484 - 18013446
Alignment:
| Q |
32 |
tactcaagctgcgttatatactcatcatcaatacattgc |
70 |
Q |
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| T |
18013484 |
tactcaagctgccttatatagtcatcatcaatacattgc |
18013446 |
T |
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