View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_67 (Length: 246)
Name: NF16240_low_67
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_67 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 3190597 - 3190822
Alignment:
| Q |
1 |
aatttcatcaagcataatacatttataagaaaataaaaaaggatacgaattttgtagccacgttttgccattttttgatgggcacctatgaaaccagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3190597 |
aatttcatcaagcataatacatttataagaaaataaaaaaggatacgaattttgtagccacgttttgccattttttgatgggcacctatgaaaccagctt |
3190696 |
T |
|
| Q |
101 |
cttgagctgnnnnnnnnnctcctttctgaatcaaagcagcaattgatgacttgggtcgacttcaaaaatgactttttctgcttcttgaagaagcacgttt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3190697 |
cttgagctg-aaaaaaaactcctttctgaatcaaagcagcaattgatgacttgggtcgacttcaaaaatgactttttctgcttcttgaagaagcacgttt |
3190795 |
T |
|
| Q |
201 |
gagaagcagttttgttttgttaggtga |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3190796 |
gagaagcagttttgttttgttaggtga |
3190822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University