View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_74 (Length: 236)
Name: NF16240_low_74
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34658027 - 34658247
Alignment:
| Q |
1 |
tttacccctattaaggttcctatcaggtaaccaattattttccttgccactatatttatgcactagtgtcactataaatgtaccaacatagcttccaata |
100 |
Q |
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| T |
34658027 |
tttacccctattaaggttcctatcaggtaaccaattattttccttgccactatatttatgcactagtgtcactataaatgtaccaacatagcttccaata |
34658126 |
T |
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| Q |
101 |
gctatgattatgcaatagatagctgtagcagtacttctcatactttcaggtgcttgatcaaagagaaattcaaaaagtccaacagacataaaaacatcag |
200 |
Q |
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| T |
34658127 |
gctatgattatgcaatagatagctgtagcagtacttctcatactttcaggtgcttgatcaaagagaaattcaaaaagtccaacagacataaaaacatcag |
34658226 |
T |
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| Q |
201 |
caagtccatgaaaacaatatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34658227 |
caagtccatgaaaacaatatt |
34658247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 34645002 - 34645220
Alignment:
| Q |
3 |
tacccctattaaggttcctatcaggtaaccaattattttccttgccactatatttatgcactagtgtcactataaatgtaccaacatagcttccaatagc |
102 |
Q |
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| T |
34645002 |
tacccctattaaggtttctatcaggaagccaattattttccttaccagtatacttatggactattgataccaataatgtaccagaataattaccaatggc |
34645101 |
T |
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| Q |
103 |
tatgattatgcaatagatagctgtagcagtacttctcatactttcaggtgcttgatcaaagagaaattcaaaaagtccaacagacataaaaacatcagca |
202 |
Q |
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| T |
34645102 |
tgtagttatgcaatacaaagcagtagcactacttctcatactttcaggtgattgatcaaagagaaattccaaatgtccaacagacatgaaaacttcagcc |
34645201 |
T |
|
| Q |
203 |
agtccatgaaaacaatatt |
221 |
Q |
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| T |
34645202 |
actccatgaagacaatatt |
34645220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 34664704 - 34664918
Alignment:
| Q |
5 |
cccctattaaggttcctatcaggtaaccaattattttccttgccactatatttatgcactagtgtcactataaatgtaccaacatagcttccaatagcta |
104 |
Q |
| |
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|||||||| ||||||||||||||||||||||| | ||||| ||| |||| |||||||| ||||| || | |||||||||| | || ||||||||| | |
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| T |
34664704 |
cccctattgaggttcctatcaggtaaccaattcctctccttaccagtatacttatgcacaagtgttaccaataatgtaccaataaagtgtccaatagcaa |
34664803 |
T |
|
| Q |
105 |
tgattatgcaatagatagctgtagcagtacttctcatactttcaggtgcttgatcaaagagaaattcaaaaagtccaacagacataaaaacatcagcaag |
204 |
Q |
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| T |
34664804 |
tagctatgcagtacaaagcagtagcactgcttctcatactttcaggtgattgatcatagagaaattctaaatgtccaacattcatgaaaacttcagccac |
34664903 |
T |
|
| Q |
205 |
tccatgaaaacaata |
219 |
Q |
| |
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|||||| ||| |||| |
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| T |
34664904 |
tccatgcaaaaaata |
34664918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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