View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_77 (Length: 226)
Name: NF16240_low_77
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_77 |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 18061811 - 18061924
Alignment:
| Q |
16 |
tcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
115 |
Q |
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| T |
18061811 |
tcagtatcactgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
18061910 |
T |
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| Q |
116 |
tacccttttggagc |
129 |
Q |
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| T |
18061911 |
tacccttttggagc |
18061924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 55565971 - 55566067
Alignment:
| Q |
12 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
108 |
Q |
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| T |
55565971 |
atcatcagtatcattgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 55565924 - 55566004
Alignment:
| Q |
28 |
tcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
108 |
Q |
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| T |
55565924 |
tcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 18061870 - 18061939
Alignment:
| Q |
12 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatca |
81 |
Q |
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| T |
18061870 |
atcatcagtatcattgtcattttccggttctaaagtgtcagtacccttttggagcgtatcataatcatca |
18061939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 18061707 - 18061760
Alignment:
| Q |
30 |
attttccggttctaaaatgtaactagccctttgg-agcttatcataatcatcag |
82 |
Q |
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| T |
18061707 |
attttccggttctaaaatgtcactagccttttggtagcttatcatcatcatcag |
18061760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 18061989 - 18062045
Alignment:
| Q |
23 |
cactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcat |
79 |
Q |
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| T |
18061989 |
cactgtaatttacaggttctaaaatgtcactagccttttggagcttatcatcatcat |
18062045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 55566034 - 55566069
Alignment:
| Q |
12 |
atcatcagtatcactgtcattttccggttctaaaat |
47 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
55566034 |
atcatcagtatcattgtcattttccggttctaaaat |
55566069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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