View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_79 (Length: 224)
Name: NF16240_low_79
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 31057352 - 31057549
Alignment:
| Q |
19 |
aatttgatcaatttgcaagtcctcagtgtccaagaaaacaatcccactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaag |
118 |
Q |
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| T |
31057352 |
aatttgatcaatttgcaagtcctcagtgtccaagaaaacaatctcactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaag |
31057451 |
T |
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| Q |
119 |
tagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgattttcttcgacat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31057452 |
tagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgattttgttggacat |
31057549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 31139188 - 31139352
Alignment:
| Q |
43 |
agtgtccaagaaaacaatcccactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaagtagctaccaataaacttcatggta |
142 |
Q |
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| T |
31139188 |
agtgtccaagaaaacaatctcacaggaactattccaactacaattggaaatttgaatcggctcactgtctttgaagtagctgccaataaacttcatggta |
31139287 |
T |
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| Q |
143 |
gaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgatttt |
207 |
Q |
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| T |
31139288 |
gaattccaaatggactttataacataaccaattggttttcctttattgtgtccaaaaatgatttt |
31139352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 31101787 - 31101975
Alignment:
| Q |
19 |
aatttgatcaatttgcaagtcctcagtgtccaagaaaacaatcccactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaag |
118 |
Q |
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||||||||||||||| || | | |||||||||| |||||||| ||| ||||||||||||||| |||| |||||||||||| ||||| ||| ||||||| |
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| T |
31101787 |
aatttgatcaatttgaaatactttagtgtccaagtaaacaatctcacaggaactattccagctacaatcggaaatttgaagcagctcattgtctttgaag |
31101886 |
T |
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| Q |
119 |
tagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgatttt |
207 |
Q |
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||||| |||| |||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
31101887 |
tagcttccaacaaactttatggtagaattccaaatggactttataacattaccaattggtattcctttgttgtgtccgaaaatgatttt |
31101975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 31182879 - 31183067
Alignment:
| Q |
19 |
aatttgatcaatttgcaagtcctcagtgtccaagaaaacaatcccactggaactattccagcttcaattggaaatttgaagtggctcactgtttttgaag |
118 |
Q |
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||||||||||||||| | |||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||||| ||| |||||| |
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| T |
31182879 |
aatttgatcaatttggtaatccttagtctccaagaaaacaatctcactggaacaattccagctacaattggaaatttgaagctgctcagtgtctttgaat |
31182978 |
T |
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| Q |
119 |
tagctaccaataaacttcatggtagaattccaaatggtctttataacataaccaattggatttcctttgttgtgtccgaaaatgatttt |
207 |
Q |
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| T |
31182979 |
taactaaaaataaacttcatggtagaattccaaatgaactcaataacaacaccaattggtattcctttcttgtgtctgagaatgatttt |
31183067 |
T |
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