View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_80 (Length: 224)
Name: NF16240_low_80
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 3530659 - 3530443
Alignment:
| Q |
1 |
tatcattccattccatttgatattgttctcctaatgatctcatttcttccataagtttatcatccacggctgaatgacattctccttcgtcgaccttagt |
100 |
Q |
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| T |
3530659 |
tatcattccattccatttgatattgttctcctaatgatctcatttcttccataagtttatcatccacggctgaatgacattctccttcgtcgaccttagt |
3530560 |
T |
|
| Q |
101 |
tgtaacccttgattcaatggtatcaacctctaaagtcacaccttcttcatgtgatactttattaattgaaggaacttcatgatcatttggtagagaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530559 |
tgtaacccttgattcaatggtatcaacctctaaagtcacaccttcttcatgtgatactttattaattgaaggaacttcatgatcatttggtagagaaagt |
3530460 |
T |
|
| Q |
201 |
gaaggaaatgatgatgt |
217 |
Q |
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||||||||||||||||| |
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| T |
3530459 |
gaaggaaatgatgatgt |
3530443 |
T |
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