View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16240_low_81 (Length: 224)

Name: NF16240_low_81
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16240_low_81
NF16240_low_81
[»] chr1 (23 HSPs)
chr1 (1-224)||(48823898-48824113)
chr1 (178-224)||(4609075-4609121)
chr1 (178-224)||(34062222-34062268)
chr1 (178-224)||(46333959-46334005)
chr1 (178-224)||(49444990-49445036)
chr1 (181-224)||(29371381-29371424)
chr1 (178-224)||(1819502-1819548)
chr1 (178-224)||(9157389-9157435)
chr1 (178-224)||(28928792-28928838)
chr1 (190-224)||(36290428-36290462)
chr1 (182-220)||(37155129-37155167)
chr1 (178-224)||(38674518-38674564)
chr1 (178-224)||(38674582-38674628)
chr1 (178-224)||(46334025-46334071)
chr1 (181-222)||(34062291-34062332)
chr1 (180-224)||(19711193-19711237)
chr1 (181-224)||(8337933-8337976)
chr1 (181-224)||(47303477-47303520)
chr1 (178-224)||(15220824-15220870)
chr1 (178-224)||(32157604-32157650)
chr1 (178-223)||(2573169-2573214)
chr1 (178-211)||(37155072-37155105)
chr1 (188-224)||(5694903-5694939)
[»] chr4 (19 HSPs)
chr4 (178-224)||(50384118-50384164)
chr4 (178-224)||(31430474-31430520)
chr4 (178-224)||(47404598-47404644)
chr4 (178-223)||(52028628-52028673)
chr4 (181-224)||(40789192-40789235)
chr4 (178-224)||(24006083-24006129)
chr4 (178-224)||(40789258-40789304)
chr4 (178-224)||(42375023-42375069)
chr4 (178-224)||(47404664-47404710)
chr4 (178-224)||(55090009-55090055)
chr4 (178-224)||(55090075-55090121)
chr4 (179-216)||(53954631-53954668)
chr4 (179-224)||(55089890-55089935)
chr4 (181-224)||(28693936-28693979)
chr4 (181-224)||(52028562-52028605)
chr4 (190-224)||(24006153-24006187)
chr4 (190-224)||(31430549-31430583)
chr4 (178-211)||(6271781-6271814)
chr4 (178-214)||(26186039-26186075)
[»] chr2 (12 HSPs)
chr2 (178-224)||(2893976-2894022)
chr2 (178-224)||(2828597-2828643)
chr2 (178-224)||(15011359-15011405)
chr2 (178-218)||(2828663-2828703)
chr2 (181-224)||(6217306-6217349)
chr2 (178-224)||(38933600-38933646)
chr2 (181-222)||(29925652-29925693)
chr2 (178-224)||(2143951-2143997)
chr2 (178-224)||(2894042-2894088)
chr2 (178-224)||(14229432-14229477)
chr2 (182-224)||(14464568-14464610)
chr2 (178-211)||(6721977-6722010)
[»] scaffold0047 (2 HSPs)
scaffold0047 (178-220)||(63836-63878)
scaffold0047 (181-224)||(63770-63813)
[»] chr8 (4 HSPs)
chr8 (178-224)||(34229720-34229766)
chr8 (178-224)||(34541816-34541862)
chr8 (178-224)||(6296618-6296664)
chr8 (181-220)||(39850972-39851011)
[»] chr7 (9 HSPs)
chr7 (178-224)||(41018241-41018287)
chr7 (181-224)||(29053396-29053439)
chr7 (178-224)||(27028806-27028852)
chr7 (178-224)||(34854708-34854754)
chr7 (178-224)||(42628308-42628354)
chr7 (190-224)||(4649333-4649367)
chr7 (178-224)||(4649401-4649447)
chr7 (190-224)||(29053327-29053361)
chr7 (190-224)||(45231867-45231901)
[»] chr6 (8 HSPs)
chr6 (178-224)||(10521862-10521908)
chr6 (178-220)||(31654322-31654364)
chr6 (178-224)||(24618680-24618726)
chr6 (178-224)||(10521928-10521974)
chr6 (178-224)||(12343113-12343159)
chr6 (178-211)||(12343179-12343212)
chr6 (178-211)||(13043536-13043569)
chr6 (181-221)||(551181-551221)
[»] chr5 (10 HSPs)
chr5 (178-224)||(3899852-3899898)
chr5 (178-224)||(16439217-16439263)
chr5 (178-224)||(16971157-16971203)
chr5 (182-224)||(28818930-28818972)
chr5 (178-223)||(38134452-38134497)
chr5 (190-224)||(2953211-2953245)
chr5 (190-224)||(26662412-26662446)
chr5 (190-224)||(26934007-26934041)
chr5 (178-211)||(2953269-2953302)
chr5 (178-211)||(29699446-29699479)
[»] chr3 (13 HSPs)
chr3 (178-224)||(33689255-33689301)
chr3 (181-224)||(1801577-1801620)
chr3 (181-224)||(49414505-49414548)
chr3 (190-224)||(39385779-39385813)
chr3 (180-224)||(18321732-18321776)
chr3 (181-224)||(47677337-47677380)
chr3 (178-224)||(1272506-1272552)
chr3 (181-219)||(1801528-1801566)
chr3 (178-224)||(29031727-29031773)
chr3 (178-224)||(30476487-30476533)
chr3 (178-224)||(43139722-43139768)
chr3 (178-224)||(47677268-47677314)
chr3 (178-211)||(47492073-47492106)
[»] scaffold0016 (1 HSPs)
scaffold0016 (178-224)||(49782-49828)
[»] scaffold0481 (1 HSPs)
scaffold0481 (181-224)||(2900-2943)
[»] scaffold0586 (1 HSPs)
scaffold0586 (178-211)||(7126-7159)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48824113 - 48823898
Alignment:
Q  1 tccttatgctacatggcactgtatgatatcctcattttgaagtgataattgataaaacaagtaattaataccttataaaattgatgttactcgtgtatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48824113 tccttatgctacatggcactgtatgatatcctcattttgaagtgataattgataaaacaagtaattaataccttataaaattgatgttactcgtgtatgt 48824014  T
Q  101 ctttaattggttcagtttggacttttttagtattagttttcttagtaacatagtgtttccccaactctatgtcgccaaagcattgtgatattgtgattgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||| || ||||||||||| |||||||||||    
T  48824013 ctttaattggttcagtttggacttttttagtattagttttcttagtaaca--------ccccaactctatgtcacccaagcattgtgacattgtgattgg 48823922  T
Q  201 ccaatgtcacccaactctatgtca 224  Q
    ||||||||||||||||||||||||    
T  48823921 ccaatgtcacccaactctatgtca 48823898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 4609075 - 4609121
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  4609075 aagcattgtgacattgtgattgaccaatgtcacccaactctatgtca 4609121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 34062268 - 34062222
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  34062268 aagcattgtggcattgtgattggccaatgtcacccaactctatgtca 34062222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 46334005 - 46333959
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  46334005 aagcattgtgacattgtgattggccaatgtcatccaactctatgtca 46333959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 49444990 - 49445036
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  49444990 aagcattgtggcattgtgattggccaatgtcacccaactctatgtca 49445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 29371424 - 29371381
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  29371424 cattgtgacattgtgattggccaatgtcacctaactctatgtca 29371381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 1819548 - 1819502
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||  |||||||||||||||||||||||    
T  1819548 aagcattgtgacattgtgattgatcaatgtcacccaactctatgtca 1819502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 9157389 - 9157435
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||||||||||||||  |||||||| ||||||||||||||    
T  9157389 aagcattgtgatattgtgattgatcaatgtcaaccaactctatgtca 9157435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 28928838 - 28928792
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||    
T  28928838 aagcactgtgacattgtgattggccaatgtcaccaaactctatgtca 28928792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 36290462 - 36290428
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||||||||||||||||||||||||||    
T  36290462 attgtgattggccaatgtcacccaactctatgtca 36290428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 37155129 - 37155167
Alignment:
Q  182 attgtgatattgtgattggccaatgtcacccaactctat 220  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  37155129 attgtgacattgtgattggccaatgtcacccaactctat 37155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 38674564 - 38674518
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  38674564 aagcattgtgacattgtgattggccaatatcacccaactccatgtca 38674518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 38674582 - 38674628
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  38674582 aagcattgtgacattatgattggccaatatcacccaactctatgtca 38674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 46334025 - 46334071
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||    
T  46334025 aagcattgtgacattgtgattggtcaatgtcatccaactctatgtca 46334071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 34062291 - 34062332
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgt 222  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  34062291 cattgtgacattgtgattggtcaatgtcacccaactctatgt 34062332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 19711237 - 19711193
Alignment:
Q  180 gcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||    
T  19711237 gcattgtaacattgtgattggtcaatgtcacccaactctatgtca 19711193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 8337933 - 8337976
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||  ||||||||||| |||||||||||||||||||||||    
T  8337933 cattgtggcattgtgattggtcaatgtcacccaactctatgtca 8337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 47303477 - 47303520
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||    
T  47303477 cattgtgacattgtgattgaccaatgtcacctaactctatgtca 47303520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 15220870 - 15220824
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| || ||||||| ||||||||||||||||| ||||||    
T  15220870 aagcattgtgagatcgtgattgaccaatgtcacccaactccatgtca 15220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 32157604 - 32157650
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| | |||||||| ||||||||||| ||||||||||||    
T  32157604 aagcattgtgacactgtgattgaccaatgtcaccaaactctatgtca 32157650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 2573214 - 2573169
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtc 223  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||    
T  2573214 aagcattgtgatattgtgattagtcaatatcactcaactctatgtc 2573169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 37155105 - 37155072
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  37155105 aagcattgtgacattgtgattggccaatgtcacc 37155072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 5694939 - 5694903
Alignment:
Q  188 atattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  5694939 atattgtgattgaccaatgtcaccaaactctatgtca 5694903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 50384164 - 50384118
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  50384164 aagcattgtgacattgtgattggccaatgtcacccaactctatgtca 50384118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 31430520 - 31430474
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacccaactctatgtca 31430474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 47404644 - 47404598
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  47404644 aagcattgtgacattgtgattgaccaatgtcacccaactctatgtca 47404598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 52028628 - 52028673
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtc 223  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  52028628 aagcattgtgacattgtgattggccaatgtcacccaattctatgtc 52028673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 40789235 - 40789192
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  40789235 cattgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 24006129 - 24006083
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  ||||||||||||||||||||||||||| |||||||    
T  24006129 aagcattgtgtcattgtgattggccaatgtcacccaactgtatgtca 24006083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 40789258 - 40789304
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  40789258 aagcattgtgacattgtgattggccaatatcaccaaactctatgtca 40789304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 42375069 - 42375023
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||    
T  42375069 aagcattgtggcattgtgattgaccaatgtcacccaactctatgtca 42375023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 47404664 - 47404710
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||    
T  47404664 aagcattgtggcattgtgattgaccaatgtcacccaactctatgtca 47404710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 55090055 - 55090009
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||    
T  55090055 aagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 55090075 - 55090121
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||    
T  55090075 aagcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55090121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 53954668 - 53954631
Alignment:
Q  179 agcattgtgatattgtgattggccaatgtcacccaact 216  Q
    |||||||||| |||||||||||||||||||||||||||    
T  53954668 agcattgtgacattgtgattggccaatgtcacccaact 53954631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 55089935 - 55089890
Alignment:
Q  179 agcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||| |||||||||| |||||||||| |||||||||||||    
T  55089935 agcattgtgacattgtgattgaccaatgtcactcaactctatgtca 55089890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 28693979 - 28693936
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||||||||||| |||||||| |||||| |||||||    
T  28693979 cattgtgatattgtgattggtcaatgtcatccaactttatgtca 28693936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 52028605 - 52028562
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| || ||||||||||||| ||||||||||||||||||    
T  52028605 cattgtgacatcgtgattggccaatatcacccaactctatgtca 52028562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 24006153 - 24006187
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  24006153 attgtgattggtcaatgtcacccaactctatgtca 24006187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 31430549 - 31430583
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  31430549 attgtaattggccaatgtcacccaactctatgtca 31430583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 6271781 - 6271814
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  6271781 aagcattgtgacattgtgattggccaatgtcacc 6271814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 26186075 - 26186039
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaa 214  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  26186075 aagcattgtgacattgtgattgaccaatgtcacccaa 26186039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 2894022 - 2893976
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  2894022 aagcattgtgagattgtgattggccaatgtcacccaactctatgtca 2893976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 2828643 - 2828597
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2828643 aagcattttgacattgtgattggccaatgtcacccaactctatgtca 2828597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 15011359 - 15011405
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||    
T  15011359 aagcattgtgacattgtgattggccaatgtcactcaactctatgtca 15011405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 2828663 - 2828703
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactct 218  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  2828663 aagcattgtgacattgtgattggccaatgtcacccaactct 2828703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 6217306 - 6217349
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  6217306 cattgtggcattgtgattggccaatgtcacccaactctatgtca 6217349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 38933646 - 38933600
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||    
T  38933646 aagcattgtggcattgtgattggtcaatgtcacccaactctatgtca 38933600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 29925652 - 29925693
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgt 222  Q
    |||||||  |||||||||||||||||||||||||||||||||    
T  29925652 cattgtggcattgtgattggccaatgtcacccaactctatgt 29925693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 2143951 - 2143997
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| ||| ||||||||||||||| ||||| |||||||||||||    
T  2143951 aagcattatgacattgtgattggccaacgtcactcaactctatgtca 2143997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 2894042 - 2894088
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| | |||||||| ||||||||| ||||||||||||||    
T  2894042 aagcattgtgacactgtgattgaccaatgtcatccaactctatgtca 2894088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 14229432 - 14229477
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  14229432 aagcattgtgacattgtgattg-ccaatgtcatccaactctatgtca 14229477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 14464610 - 14464568
Alignment:
Q  182 attgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| |||||||||| |||||||||| |||||||||||||    
T  14464610 attgtgacattgtgattgaccaatgtcactcaactctatgtca 14464568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 6722010 - 6721977
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||||||||||||||| ||||||||||    
T  6722010 aagcattgtgatattgtgattggtcaatgtcacc 6721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 63836 - 63878
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctat 220  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  63836 aagcattgtgacattgtgattggccaatgtcacccaactctat 63878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 63813 - 63770
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  63813 cattgtggcattgtgattggccaatgtcacccaactctatgtca 63770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 34229720 - 34229766
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||    
T  34229720 aagcattgtgatattgtgattgaccaatgtcacctaactctatgtca 34229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 34541862 - 34541816
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  34541862 aagcattgtgatattatgattggccaatgtcacccaactttatgtca 34541816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 6296664 - 6296618
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  6296664 aagcattatgacattgtgattggtcaatgtcacccaactctatgtca 6296618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 39851011 - 39850972
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctat 220  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  39851011 cattgtggcattgtgattggccaatgtcacccaactctat 39850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 41018287 - 41018241
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  41018287 aagcattgggacattgtgattggccaatgtcacccaactctatgtca 41018241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 29053396 - 29053439
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  29053396 cattgtggcattgtgattggccaatgtcacccaactctatgtca 29053439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 27028852 - 27028806
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||    
T  27028852 aagcattgtgacattgtgattgtccaatgttacccaactctatgtca 27028806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 34854754 - 34854708
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  34854754 aagcattgtggcattgtgattggccaatgtcaccaaactctatgtca 34854708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 42628354 - 42628308
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||    
T  42628354 aagcattgtggcattgtgattggtcaatgtcacccaactctatgtca 42628308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 4649367 - 4649333
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||| ||||||||||||||||||||||||    
T  4649367 attgtgattgaccaatgtcacccaactctatgtca 4649333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 4649401 - 4649447
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||| |||| |||||||||| ||||||||||| ||||||||||||    
T  4649401 aagcatcgtgacattgtgattgaccaatgtcaccaaactctatgtca 4649447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 29053361 - 29053327
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||||||||||||| ||||||||||||    
T  29053361 attgtgattggccaatgtcaccaaactctatgtca 29053327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 45231901 - 45231867
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  45231901 attgtgattggtcaatgtcacccaactctatgtca 45231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 10521908 - 10521862
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||    
T  10521908 aagcattgtgacattgtgattggccaatgtcaccaaactctatgtca 10521862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 31654364 - 31654322
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctat 220  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  31654364 aagcattgtgacattgtgattggccaatgtcacccaactctat 31654322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 24618680 - 24618726
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  24618680 aagcattgtgacattgtgattggtcaacgtcacccaactctatgtca 24618726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 10521928 - 10521974
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| ||| |||||||||| |||||||||| |||||||||||||    
T  10521928 aagcattatgacattgtgattgaccaatgtcactcaactctatgtca 10521974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 12343159 - 12343113
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||| | ||||||||||||||||||||||    
T  12343159 aagcattgtggcattgtgattgactaatgtcacccaactctatgtca 12343113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 12343179 - 12343212
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  12343179 aagcattgtgacattgtgattggccaatgtcacc 12343212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 13043536 - 13043569
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  13043536 aagcattgtgatattgtgattagccaatgtcacc 13043569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 551221 - 551181
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatg 221  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  551221 cattgtggcattgtgattgaccaatgtcacccaactctatg 551181  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 3899898 - 3899852
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||    
T  3899898 aagcattgtggcattgtgattggccaatgtcacccaactctatgtca 3899852  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 16439217 - 16439263
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| ||||||||||  |||||||||||||||||||||||    
T  16439217 aagcattgtgacattgtgattgatcaatgtcacccaactctatgtca 16439263  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 16971203 - 16971157
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  ||||||||||||||||||||||||| |||||||||    
T  16971203 aagcattgtggcattgtgattggccaatgtcacccaagtctatgtca 16971157  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 224
Target Start/End: Complemental strand, 28818972 - 28818930
Alignment:
Q  182 attgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  28818972 attgtgacattgtgattgaccaatgtcacccaactctatgtca 28818930  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 38134452 - 38134497
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtc 223  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||||    
T  38134452 aagcattgtgacattgtgattggccaatatcatccaactctatgtc 38134497  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 2953245 - 2953211
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||| ||||||||||||||||||||||||    
T  2953245 attgtgattgaccaatgtcacccaactctatgtca 2953211  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 26662446 - 26662412
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  26662446 attgtgattggtcaatgtcacccaactctatgtca 26662412  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 26934041 - 26934007
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||    
T  26934041 attgtgattggtcaatgtcacccaactctatgtca 26934007  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 2953269 - 2953302
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  2953269 aagcattgtgacattgtgattggccaatgtcacc 2953302  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 29699446 - 29699479
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  29699446 aagcattgtgacattgtgattggccaatgtcacc 29699479  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 33689255 - 33689301
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  33689255 aagcattgtgacattgtgattggccaatgtcacccaactcaatgtca 33689301  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 1801577 - 1801620
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||  |||||||||||||||||||||||||||||||||||    
T  1801577 cattgtggcattgtgattggccaatgtcacccaactctatgtca 1801620  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 49414505 - 49414548
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  49414505 cattgtgacattgtaattggccaatgtcacccaactctatgtca 49414548  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 39385779 - 39385813
Alignment:
Q  190 attgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||||||||||||||||||||||||||||||    
T  39385779 attgtgattggccaatgtcacccaactctatgtca 39385813  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 18321732 - 18321776
Alignment:
Q  180 gcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  18321732 gcattgtgacattgtgattgaccaatgtcatccaactctatgtca 18321776  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 47677337 - 47677380
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| ||||||||||  |||||||||||||||||||||||    
T  47677337 cattgtgacattgtgattgatcaatgtcacccaactctatgtca 47677380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 1272552 - 1272506
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| | | |||||||||||||||||| ||||||||||||    
T  1272552 aagcattgtgacaatttgattggccaatgtcaccaaactctatgtca 1272506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 1801528 - 1801566
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactcta 219  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  1801528 cattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 29031773 - 29031727
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||| ||||| ||||| ||||||||||||    
T  29031773 aagcattgtgacattgtgattgaccaatatcacctaactctatgtca 29031727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 30476533 - 30476487
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||||||||||||||||| | |||| |||||    
T  30476533 aagcattgtgacattgtgattggccaatgtcacctagctctctgtca 30476487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 43139768 - 43139722
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||| ||| |||||||||| || |||||||||||||||||||||    
T  43139768 aagcattctgacattgtgattgaccgatgtcacccaactctatgtca 43139722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 47677314 - 47677268
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||||    
T  47677314 aagcattgtgacattgtgatcggtcaatgtcaccaaactctatgtca 47677268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 47492106 - 47492073
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  47492106 aagcattgtgacattgtgattggccaatgtcacc 47492073  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 49782 - 49828
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  49782 aagcattgtggcattgtgattggccaatgtcacctaactctatgtca 49828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 2943 - 2900
Alignment:
Q  181 cattgtgatattgtgattggccaatgtcacccaactctatgtca 224  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||    
T  2943 cattgtgacattgtgattggtcaatatcacccaactctatgtca 2900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 7126 - 7159
Alignment:
Q  178 aagcattgtgatattgtgattggccaatgtcacc 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  7126 aagcattgtgacattgtgattggccaatgtcacc 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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