View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_83 (Length: 222)
Name: NF16240_low_83
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_83 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 27991717 - 27991875
Alignment:
| Q |
55 |
ggtatgtaaaagttttgatccgatccttgcttaaaggagcacttattaacctaacctcnnnnnnn-gnnnnnnnccaaaactgaacataacccaaattga |
153 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||| |
|
|
| T |
27991717 |
ggtatgtaaaagctttgatccgatccttgcttaaaggagcacttattaacctaaccttttttttttgaaaaaaaccaaaactgaacttaactcaaattga |
27991816 |
T |
|
| Q |
154 |
acaaaagccagtgattgaaccctaacattaaaacttaatcaaa-tgattcatctcactc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
27991817 |
acaaaagccagtgattgaaccctaacattaaaacttaatcaaattgattcatttcactc |
27991875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 24004115 - 24004184
Alignment:
| Q |
128 |
ccaaaactgaacataacccaaattgaacaaaagccagtgattgaaccctaacattaaaacttaatcaaat |
197 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24004115 |
ccaaaactgaacttaatccaagttgaacaaaaaacagtgattgaaccctaacattaaaacttaatcaaat |
24004184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University