View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16240_low_86 (Length: 219)
Name: NF16240_low_86
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_86 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 39053698 - 39053585
Alignment:
| Q |
13 |
ataattctgttgtaaccattcannnnnnncttctacacatacgtacatccattatcccaaaagatttacgtatgactaaacggttcatattcttcatctt |
112 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39053698 |
ataattctgttgtaaccattcatttttttcttcaacacatacgtacatccattatcccaaaagatttacgtatgactaaacggttcatattcttgatctt |
39053599 |
T |
|
| Q |
113 |
caaattttaaacaa |
126 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39053598 |
caaattttaaacaa |
39053585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University