View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16240_low_9 (Length: 572)
Name: NF16240_low_9
Description: NF16240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16240_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 5997958 - 5998518
Alignment:
| Q |
1 |
tccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatctcactagctttctttatcactcattcgtccaacatttg |
100 |
Q |
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| T |
5997958 |
tccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatttcactagctttctttatcactcattcgtccaacatttg |
5998057 |
T |
|
| Q |
101 |
ttgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcctgctcaactatgattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998058 |
ttgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcctgctcaactatgattcc |
5998157 |
T |
|
| Q |
201 |
tacctttttggttattgatcctattcccattcaacttgtcttaaattttggttttgacgatgtactttgttttcatgataatttgctttagaatgagtcc |
300 |
Q |
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| T |
5998158 |
tacctttttggttattgatcctattcccattcaacttgtcttaaattttggttttgacgatgtactttgttttcatgataatttgctttagaatgagtcc |
5998257 |
T |
|
| Q |
301 |
aaaacctacatttagtaggataagaaactacgttttataaagccttgtggtcaccaacataaaagtgtattgtagttcagtttagtttctgttgatttgg |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998258 |
aaaacctacatttaataggataagaaactacgttttataaagccttgtggtcaccaacataaaagtgtattgtagttcagtttagtttctgttgatttgg |
5998357 |
T |
|
| Q |
401 |
ttcctctttt-taacctgactctatagatgttattttagtattttgtcatgattggaataaagttgtacaagcttttgtgtgggatggtacgagttgaga |
499 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5998358 |
ttcctcttttataacctgactctatagatgttattttattattttgtcatgattggaataaagttgtacaagcttttgtgtgggatggtacgagttgaga |
5998457 |
T |
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| Q |
500 |
attattccgaaagataatgaaaaatgatgaatgaatctaaatgaattttgcctgttgcttc |
560 |
Q |
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| T |
5998458 |
attattccgaaagataatgaaaaatgatgaatgaatctaaatgaattttgcctgttgcttc |
5998518 |
T |
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