View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_high_10 (Length: 250)
Name: NF16241_high_10
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 30447867 - 30447651
Alignment:
| Q |
19 |
tggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttcatatactc--gtgtgtcagcacctggagttatgttcggatgcttggagaagt |
116 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30447867 |
tggtagtttttcgcaacattgtaattgaaccggttgagacttgagttcatatactcatgtgtgtcagcacctggagttatgttcggatgcttggagaagt |
30447768 |
T |
|
| Q |
117 |
tcacctccaaatgctttccaaacaacatggcaattatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgattaatattgttgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30447767 |
tcacctccaaatgctttccaaacaacatggcaattatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgattaatattgttgt |
30447668 |
T |
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| Q |
217 |
atgcatgttgtataaga |
233 |
Q |
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||||||||||| ||||| |
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| T |
30447667 |
atgcatgttgtttaaga |
30447651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 30430587 - 30430503
Alignment:
| Q |
149 |
attatttatgtcaatttgatttgctcaaagtgtcattttctaacgtatttattgattaatattgttgtatgcatgttgtataaga |
233 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||||||||||| |||| |
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| T |
30430587 |
attatttatgccaatttgatttgctcaaagtgtcactttctcacttatttattgattagcattgttatatgcatgttgtagaaga |
30430503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 30430046 - 30429999
Alignment:
| Q |
179 |
tgtcattttctaacgtatttattgattaatattgttgtatgcatgttg |
226 |
Q |
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| T |
30430046 |
tgtcattttctcacttatttaatgattaatattgttttatgcatgttg |
30429999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 30429823 - 30429772
Alignment:
| Q |
177 |
agtgtcattttctaacg--tatttattgattaatattgttgtatgcatgttg |
226 |
Q |
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| T |
30429823 |
agtgtcattttctaacacttatttattgattaatattgtactatgcatgttg |
30429772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 13367110 - 13367183
Alignment:
| Q |
75 |
gtgtgtcagcacctggagttatgttcggatgcttggagaagttcacctccaaatgctttccaaacaacatggca |
148 |
Q |
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| T |
13367110 |
gtgtatcagcacctgggattatgtttggagaccttgagaagttcacctccaaatgttttccaaacaacatggca |
13367183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 13322778 - 13322732
Alignment:
| Q |
101 |
ggatgcttggagaagttcacctccaaatgctttccaaacaacatggc |
147 |
Q |
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| T |
13322778 |
ggatgctttgagaagttcacatccaaatgctttccgaacaacatggc |
13322732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 13354645 - 13354598
Alignment:
| Q |
20 |
ggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttca |
67 |
Q |
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| T |
13354645 |
ggtagtttttcgcaacattctgattgaacctgttgagacttgacttca |
13354598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 44359170 - 44359275
Alignment:
| Q |
20 |
ggtagtttttcgcaacgttgtgattgaaccggttgagacttgagttcatatactcgtgt--gtcagcacctggagttatgttcggatgcttggagaagtt |
117 |
Q |
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|||||||||| ||| |||| |||| || ||||||||| ||||||| | || |||||| |||||||||| | |||||||| |||||||| |||||||| |
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| T |
44359170 |
ggtagtttttagcagcgttacgattaaaacggttgagatttgagttgctgtagtcgtgtgtgtcagcaccttgtgttatgtttggatgcttcgagaagtt |
44359269 |
T |
|
| Q |
118 |
cacctc |
123 |
Q |
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||||| |
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| T |
44359270 |
gacctc |
44359275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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