View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_high_2 (Length: 538)
Name: NF16241_high_2
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 29701047 - 29700693
Alignment:
| Q |
17 |
ttgtttgataaaatggttttgatagttgctttgacatgaggtatgagactctccaaaaaagtcaagatgtaaaattctggagattttagtagctcttgtg |
116 |
Q |
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| T |
29701047 |
ttgtttgataaaatggttttgatagttgctttgacatgaggtatgagactctccaaaaaagtcaagatgtaaaattctggagattttagtagctcttgtg |
29700948 |
T |
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| Q |
117 |
gaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcctggaaactt |
216 |
Q |
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| T |
29700947 |
gaggtggttctacttcaggaagatcaatcagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcctggaaactt |
29700848 |
T |
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| Q |
217 |
gatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggtgcaggaatg |
316 |
Q |
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| T |
29700847 |
gatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggtgcaggaatg |
29700748 |
T |
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| Q |
317 |
aagatgagttctgatttcttgttcatctcattcatagacattttctttgttcttt |
371 |
Q |
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| T |
29700747 |
aagatgagttctgaattcttgtttatatcactcatagacattttctttgttcttt |
29700693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 400 - 522
Target Start/End: Complemental strand, 29700660 - 29700538
Alignment:
| Q |
400 |
tgtctttaaataggtggagcagtatgttactataatttttacatgtttaaaattatagtaacattattatgtgtatattttgttagtaatttgatgcacc |
499 |
Q |
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| T |
29700660 |
tgtctttaaataggtgaagcagtgtgttactataatatttacatgtttaaaattatagtaacattattatgtgtatattttgttagtaatttgatgcacc |
29700561 |
T |
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| Q |
500 |
aaattgtcaacctatcattttcc |
522 |
Q |
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| T |
29700560 |
aaattgtcaacctatcattttcc |
29700538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 110 - 364
Target Start/End: Complemental strand, 29678494 - 29678240
Alignment:
| Q |
110 |
tcttgtggaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcctg |
209 |
Q |
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|||| ||| |||| ||| |||| ||||||||||||||||| ||||| |||||| || ||||||||||||||| |||||||||| ||| || | || |
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| T |
29678494 |
tcttttggtggtgattcaacttgaggaagatcaatgagtttgatttgaggttgtaagtttaaaactgatttgatgtatgaatctgaaaatggtgtatgtg |
29678395 |
T |
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| Q |
210 |
gaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggtgc |
309 |
Q |
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| T |
29678394 |
gaaatttgatgcaaaggactgtgatgaaaatattgttgtgagtgttgattaagagttttgcaaattcaagtgatgaaactaagtggccaatatctggtga |
29678295 |
T |
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| Q |
310 |
aggaatgaagatgagttctgatttcttgttcatctcattcatagacattttcttt |
364 |
Q |
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| T |
29678294 |
gggaatgaagataagttctgctttcttctccatctcactcacaaccattttcttt |
29678240 |
T |
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