View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16241_high_4 (Length: 349)
Name: NF16241_high_4
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 38089284 - 38089050
Alignment:
| Q |
16 |
cacattgatcatcaccattacttcctctttcttcaagtctttgcccaacctttgatcaaaggattccattagattcgatcaacggggttccattagatta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38089284 |
cacattgatcatcaccattacttcctctttcttcaagtctttgcccaaccttcgatcaaaggattccattagattcgatcaacgggattccattagatta |
38089185 |
T |
|
| Q |
116 |
ttttattttattttcctttcaagaggcgcatctgtt-aagtataattcaaagtttaacataaaggtctgcttacctagtcattccaataataagataata |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089184 |
ttttattttattttcc-ttcaagaggcgcatctgttgaagtataattcaaagtttaacataaaggtctgcttacctagtcattccaataataagataata |
38089086 |
T |
|
| Q |
215 |
aatttaggcttatgattgttacgagagcaattttaa |
250 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38089085 |
attttaggcttatgattgttacgagagcaattttaa |
38089050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 38089004 - 38088915
Alignment:
| Q |
250 |
atataggattctcaaacaagggatatttgaaaagaaacaaaaaatagttttaggaagccaaattagcccctactactttatgaacctatg |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089004 |
atataggattctcaaacaagggatatttgaaaagaaacaaaaaatagttttaggaagccaaattagcccctactactttatgaacctatg |
38088915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 38091625 - 38091553
Alignment:
| Q |
16 |
cacattgatcatcaccattacttcctctttcttcaagtctttgcccaacctttgatcaaaggattccattagatt |
90 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||| ||| |||| | ||||||| |||||||||||| |
|
|
| T |
38091625 |
cacattgatcatcacaattactt-ctctttcttcaagtcttcaccc-acctccgttcaaagggttccattagatt |
38091553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 38091956 - 38092014
Alignment:
| Q |
16 |
cacattgatcatcaccattacttcctctttcttcaagtctttgcccaacctttgatcaa |
74 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||| ||||||| ||| |||||| |||||| |
|
|
| T |
38091956 |
cacattaattatcaccattacttccactttcttgaagtcttcgccaaaccttcgatcaa |
38092014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 19874709 - 19874758
Alignment:
| Q |
17 |
acattgatcatcaccattacttcctctttcttcaagtctttgcccaacct |
66 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19874709 |
acatcgatcatcaaaattacttcctctttcttgaagtctttgcccaacct |
19874758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 21003770 - 21003724
Alignment:
| Q |
20 |
ttgatcatcaccattacttcctctttcttcaagtctttgcccaacct |
66 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||||| ||||||||| |
|
|
| T |
21003770 |
ttgatcatcatcattacctcctctttcttgaagtcttcgcccaacct |
21003724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University