View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_high_5 (Length: 325)
Name: NF16241_high_5
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 11986703 - 11986997
Alignment:
| Q |
14 |
catcataagttgcatgaacacccacaaataaataatacacaagcatcacaccagtacaaatcaagaatctaaagaaagcctcagaacccaatgatcccat |
113 |
Q |
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| T |
11986703 |
catcataagttgcatgaacacccacaaataaataatacacaagcatcacaccagtacaaatcaagaatctaaagaaagcctcagaacccaatgatcccat |
11986802 |
T |
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| Q |
114 |
nnnnnnn-ggttcgtcgcaattgacaatgatggcacccacggaaccaaaggaaccccccaaaccttcggttgcttcttcttcggaagcaaactcatcacc |
212 |
Q |
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| T |
11986803 |
aagaaaaaggttcttcgcaattgacaatgatggcacccacggaaccaacggaaccccccaaaccttcggttgcctcttcttcggaagcaaactcatcacc |
11986902 |
T |
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| Q |
213 |
aaagtcgccgaaaaccaaacacaagcagccacggtatacccaatccaaccaaacaatccagaattccatagtccagtcccaacaacacacgaacc |
307 |
Q |
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| T |
11986903 |
aaagttgccgaaaaccaaacacaagcagccacggtatacccaatccaaccaaacaacccagaattccatagcccagtcccaacagcagacgaacc |
11986997 |
T |
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Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 21596539 - 21596833
Alignment:
| Q |
14 |
catcataagttgcatgaacacccacaaataaataatacacaagcatcacaccagtacaaatcaagaatctaaagaaagcctcagaacccaatgatcccat |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
21596539 |
catcataagttgcatgaatacccacaaataaataatacaaaagcatcacaccagtacaaatcaagaatctaaagaaagcctcggaacctaatgatcccat |
21596638 |
T |
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| Q |
114 |
nnnnnnn-ggttcgtcgcaattgacaatgatggcacccacggaaccaaaggaaccccccaaaccttcggttgcttcttcttcggaagcaaactcatcacc |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21596639 |
aagaaaaaggttcgtcgcaatcgacaatgatggcacccacggaaccaacggaactccccaaacctttggttgcttcttcttcggaagcaaactcatcacc |
21596738 |
T |
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| Q |
213 |
aaagtcgccgaaaaccaaacacaagcagccacggtatacccaatccaaccaaacaatccagaattccatagtccagtcccaacaacacacgaacc |
307 |
Q |
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||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||| |
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| T |
21596739 |
aaagtcgccaaaagccaaacacaagcagccactgtatacccaatccaaccaaacaaaccagaattccatagcgcagtcccaacaatacaagaacc |
21596833 |
T |
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