View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16241_high_9 (Length: 252)

Name: NF16241_high_9
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16241_high_9
NF16241_high_9
[»] chr4 (21 HSPs)
chr4 (131-241)||(25898161-25898271)
chr4 (1-87)||(25898031-25898117)
chr4 (6-69)||(16895928-16895991)
chr4 (6-74)||(43014591-43014659)
chr4 (6-75)||(1975366-1975435)
chr4 (6-75)||(3839095-3839164)
chr4 (6-75)||(56541738-56541807)
chr4 (5-57)||(15650485-15650537)
chr4 (3-47)||(35707655-35707699)
chr4 (5-47)||(2118191-2118233)
chr4 (5-47)||(5759342-5759384)
chr4 (5-75)||(26870028-26870098)
chr4 (4-42)||(39404590-39404628)
chr4 (6-47)||(574177-574218)
chr4 (6-47)||(3759280-3759321)
chr4 (6-47)||(12680630-12680671)
chr4 (4-57)||(19591071-19591124)
chr4 (3-40)||(27892641-27892678)
chr4 (6-47)||(39713496-39713537)
chr4 (3-47)||(2777222-2777266)
chr4 (3-47)||(29713824-29713868)
[»] scaffold0103 (1 HSPs)
scaffold0103 (3-75)||(12995-13067)
[»] chr1 (17 HSPs)
chr1 (3-75)||(28565427-28565499)
chr1 (4-75)||(28631783-28631854)
chr1 (1-47)||(3929743-3929789)
chr1 (5-74)||(20767529-20767598)
chr1 (3-47)||(4893968-4894012)
chr1 (3-47)||(42682592-42682636)
chr1 (4-47)||(10763588-10763631)
chr1 (28-75)||(15317618-15317665)
chr1 (5-47)||(29840689-29840731)
chr1 (5-47)||(38896815-38896857)
chr1 (5-42)||(47137864-47137901)
chr1 (3-47)||(1375982-1376026)
chr1 (8-75)||(13662121-13662189)
chr1 (3-39)||(23909713-23909749)
chr1 (4-40)||(29693395-29693431)
chr1 (2-42)||(45005711-45005751)
chr1 (4-40)||(48183174-48183210)
[»] chr7 (15 HSPs)
chr7 (3-75)||(9226018-9226090)
chr7 (5-75)||(38434277-38434347)
chr7 (5-75)||(19049240-19049310)
chr7 (3-75)||(17817691-17817763)
chr7 (4-75)||(42996913-42996984)
chr7 (5-74)||(27840487-27840556)
chr7 (5-57)||(12960597-12960649)
chr7 (3-47)||(39278238-39278282)
chr7 (4-47)||(691289-691332)
chr7 (4-47)||(21669230-21669273)
chr7 (5-47)||(31896813-31896855)
chr7 (5-47)||(39647981-39648023)
chr7 (6-75)||(46200663-46200733)
chr7 (3-47)||(9151419-9151463)
chr7 (6-42)||(15595430-15595466)
[»] chr6 (16 HSPs)
chr6 (5-75)||(33300640-33300710)
chr6 (5-75)||(2624721-2624791)
chr6 (4-57)||(5753125-5753178)
chr6 (24-75)||(22975736-22975787)
chr6 (24-75)||(23812614-23812665)
chr6 (5-75)||(1932312-1932382)
chr6 (4-57)||(18389166-18389219)
chr6 (4-57)||(33319039-33319092)
chr6 (4-75)||(4425880-4425951)
chr6 (4-47)||(6966235-6966278)
chr6 (4-47)||(24447795-24447838)
chr6 (10-75)||(1615103-1615168)
chr6 (6-47)||(4110061-4110102)
chr6 (5-74)||(11272735-11272804)
chr6 (4-40)||(11681668-11681704)
chr6 (4-40)||(18985190-18985226)
[»] scaffold0088 (1 HSPs)
scaffold0088 (3-75)||(52690-52762)
[»] chr8 (18 HSPs)
chr8 (4-75)||(12249910-12249981)
chr8 (4-75)||(23626054-23626125)
chr8 (4-75)||(39445226-39445297)
chr8 (4-75)||(32569575-32569646)
chr8 (5-57)||(2961008-2961060)
chr8 (5-47)||(18375557-18375599)
chr8 (6-40)||(27244398-27244432)
chr8 (5-47)||(27272686-27272728)
chr8 (5-47)||(36778480-36778522)
chr8 (5-47)||(41158644-41158686)
chr8 (4-42)||(41908015-41908053)
chr8 (5-42)||(7391327-7391364)
chr8 (6-47)||(25345996-25346037)
chr8 (6-47)||(40586443-40586484)
chr8 (4-40)||(2680234-2680270)
chr8 (3-47)||(8160417-8160461)
chr8 (3-47)||(8763013-8763057)
chr8 (3-47)||(27273878-27273922)
[»] chr3 (19 HSPs)
chr3 (4-75)||(5240960-5241031)
chr3 (6-75)||(30766478-30766547)
chr3 (4-75)||(12157707-12157778)
chr3 (5-47)||(11950990-11951032)
chr3 (5-75)||(22759056-22759126)
chr3 (6-74)||(188709-188777)
chr3 (4-47)||(8396766-8396809)
chr3 (4-47)||(22477906-22477949)
chr3 (5-47)||(4137399-4137441)
chr3 (5-47)||(18688674-18688716)
chr3 (5-47)||(26100777-26100819)
chr3 (4-42)||(26776432-26776470)
chr3 (5-47)||(35861002-35861044)
chr3 (5-42)||(21165930-21165967)
chr3 (6-75)||(44186859-44186928)
chr3 (8-75)||(16496348-16496416)
chr3 (6-42)||(22522276-22522312)
chr3 (4-40)||(41053811-41053847)
chr3 (3-47)||(50742296-50742340)
[»] chr5 (17 HSPs)
chr5 (5-75)||(9702681-9702751)
chr5 (6-75)||(42819330-42819400)
chr5 (5-74)||(22602634-22602703)
chr5 (4-75)||(32977100-32977171)
chr5 (4-74)||(36366123-36366193)
chr5 (5-57)||(7863528-7863580)
chr5 (5-57)||(9809820-9809872)
chr5 (5-75)||(8350221-8350292)
chr5 (6-57)||(12702061-12702112)
chr5 (5-75)||(2366839-2366909)
chr5 (5-47)||(34719458-34719500)
chr5 (6-47)||(3086433-3086474)
chr5 (5-42)||(5620643-5620680)
chr5 (6-47)||(25695539-25695580)
chr5 (3-47)||(752053-752097)
chr5 (4-40)||(1685046-1685082)
chr5 (4-40)||(13596926-13596962)
[»] scaffold0051 (1 HSPs)
scaffold0051 (6-75)||(61685-61754)
[»] scaffold0249 (1 HSPs)
scaffold0249 (4-57)||(24917-24970)
[»] chr2 (8 HSPs)
chr2 (4-57)||(7364770-7364823)
chr2 (6-75)||(25124044-25124113)
chr2 (4-81)||(30922096-30922173)
chr2 (24-75)||(16884220-16884271)
chr2 (24-75)||(17041910-17041961)
chr2 (5-47)||(4289027-4289069)
chr2 (5-42)||(9542629-9542666)
chr2 (3-47)||(28609953-28609997)
[»] scaffold0484 (1 HSPs)
scaffold0484 (3-42)||(8173-8212)
[»] scaffold0069 (1 HSPs)
scaffold0069 (4-47)||(14648-14691)
[»] scaffold0057 (1 HSPs)
scaffold0057 (5-47)||(17400-17442)
[»] scaffold0027 (1 HSPs)
scaffold0027 (5-57)||(143213-143265)
[»] scaffold0006 (1 HSPs)
scaffold0006 (8-75)||(151883-151951)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 25898161 - 25898271
Alignment:
Q  131 ttaatgattattgaattactgagctattcttctgaaggccggaatttgaaattcgttaatttattctacggtctacaaatattgtcttaacacaatattt 230  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25898161 ttaatgattattgaattattgagctattcttctgaaggccggaatttgaaattcgttaatttattctacggtctacaaatattgtcttaacacaatattt 25898260  T
Q  231 ttgaggttctt 241  Q
    |||||||||||    
T  25898261 ttgaggttctt 25898271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25898031 - 25898117
Alignment:
Q  1 agtaaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaatattatgatttg 87  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25898031 agtaaactagttacaaatccgtacttcgcacgggttgaataaggtatgtggtaaaaaaattgttccaaaggaaaatattatgatttg 25898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 16895991 - 16895928
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaa 69  Q
    ||||||||||||||||| ||||||||||||||||||| |||| | ||||||| |||||||||||    
T  16895991 actagttacaaacccatgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaa 16895928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 43014591 - 43014659
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    ||||||||||||||| | ||||||||||||||||||| |||| | ||||||| ||| ||||||| ||||    
T  43014591 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattattccaaaagaaa 43014659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 1975435 - 1975366
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| ||||||||||||||||| |  ||| | | ||||| |||||| ||||||||||    
T  1975435 actagttacaaacccatgcttcgcacgggttgaattacatatcttgcaaaaaaattgtttcaaaggaaaa 1975366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 3839095 - 3839164
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| | ||||||| ||||||||||| |||| | ||||||| |||||||| ||| ||||    
T  3839095 actagttacaaacccgtgcttcgcaagggttgaataacgtatcttgtaaaaaaattgttcctaagaaaaa 3839164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 56541807 - 56541738
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||  | ||||||||||||||||||| |||| | ||||||| ||| || ||||||||||    
T  56541807 actagttacaaacctgtgcttcgcacgggttgaataacgtatctcgtaaaaaaattatttcaaaggaaaa 56541738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 15650485 - 15650537
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  15650485 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 15650537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 35707655 - 35707699
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||    
T  35707655 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 35707699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2118233 - 2118191
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  2118233 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 2118191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 5759384 - 5759342
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  5759384 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 5759342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 26870028 - 26870098
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | ||| |||||||||||||||  ||| | |||||||  |||||| |||||||||    
T  26870028 aactagttacaaacccgtgctttgcacgggttgaataacatatcttgtaaaaaatttgttcaaaaggaaaa 26870098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 39404590 - 39404628
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  39404590 aaactagttacaaacccgtgcttcgcacgggttgaataa 39404628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 574177 - 574218
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  574177 actagttacaaacccgtgcttcgcacgggttgaataacgtat 574218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 3759321 - 3759280
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  3759321 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3759280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 12680630 - 12680671
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  12680630 actagttacaaacccgtgcttcgcacgggttgaataacgtat 12680671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 19591124 - 19591071
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| | ||||||||||||| ||||| |||| | |||||||    
T  19591124 aaactagttacaaacccgtgcttcgcacgggtttaataacgtatcttgtaaaaa 19591071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 27892641 - 27892678
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaat 40  Q
    |||||||||||||||||| | |||||||||||||||||    
T  27892641 taaactagttacaaacccgtgcttcgcacgggttgaat 27892678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 39713496 - 39713537
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  39713496 actagttacaaacccgtgcttcgcacgggttgaataacgtat 39713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 2777266 - 2777222
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||| ||||| ||||    
T  2777266 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 2777222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 29713868 - 29713824
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  29713868 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 29713824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 13067 - 12995
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||||| | ||||||||||||||||||| |||| | ||||||| |||||||||||||||||    
T  13067 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaa 12995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 28565427 - 28565499
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||||| | ||||||||||||||||||| |||| | ||||||| |||||||||||||||||    
T  28565427 taaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaa 28565499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 28631854 - 28631783
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  28631854 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 28631783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3929743 - 3929789
Alignment:
Q  1 agtaaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  3929743 agtaaactagttacaaacccgtgcttcgcacgggttgaataacgtat 3929789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 20767598 - 20767529
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    |||||||||||||||| | |||||||||| |||||||| |||| |  |||||||||| ||||||| ||||    
T  20767598 aactagttacaaacccgtgcttcgcacggcttgaataacgtatcttataaaaagattattccaaaagaaa 20767529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 4894012 - 4893968
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||    
T  4894012 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 4893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 42682636 - 42682592
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||    
T  42682636 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 42682592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 10763631 - 10763588
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  10763631 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 10763588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 15317665 - 15317618
Alignment:
Q  28 gcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| |||| | ||||||| |||||||||||||||||    
T  15317665 gcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaa 15317618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 29840689 - 29840731
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  29840689 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 29840731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 38896857 - 38896815
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  38896857 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 38896815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 47137901 - 47137864
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  47137901 aactagttacaaacccgtgcttcgcacgggttgaataa 47137864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1376026 - 1375982
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  1376026 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 1375982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 13662121 - 13662189
Alignment:
Q  8 tagttacaaacccatacttcgcacgggttgaataaggtatgtggt-aaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||| | |||||||||||||||||||  ||| | || ||||| ||| |||||||||||||    
T  13662121 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaa 13662189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 23909713 - 23909749
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaa 39  Q
    |||||||||||||||||| | ||||||||||||||||    
T  23909713 taaactagttacaaacccgtgcttcgcacgggttgaa 23909749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 29693431 - 29693395
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  29693431 aaactagttacaaacccgtgcttcgcacgggttgaat 29693395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 45005751 - 45005711
Alignment:
Q  2 gtaaactagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  45005751 gtaaactagttacaaacccgtgcttcgcacgggttcaataa 45005711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 48183174 - 48183210
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48183174 aaactagttacaaacccgtgcttcgcacgggttgaat 48183210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 9226018 - 9226090
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||||| | |||||||||||||||||||  ||| | ||||||| |||||||||||||||||    
T  9226018 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaa 9226090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 38434277 - 38434347
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | |||||||||||||||||||  ||| | ||||||| |||||||||||||||||    
T  38434277 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaattgttccaaaggaaaa 38434347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 19049240 - 19049310
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| ||||||||||||||||||||| || | | ||||||| ||||||  |||||||||    
T  19049240 aactagttacaaacccgtacttcgcacgggttgaataacgtgttttgtaaaaaaattgttttaaaggaaaa 19049310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17817763 - 17817691
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||||| | ||||||||||||||||||| || | | ||||||| ||||||  |||||||||    
T  17817763 taaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaaaaattgttttaaaggaaaa 17817691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 42996984 - 42996913
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | |||||||| ||||||||||  ||| | |||||||  ||||||||||||||||    
T  42996984 aaactagttacaaacccgtgcttcgcacaggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 42996913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 27840556 - 27840487
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    |||||||||||||||| | ||| ||||||||||||||| |||| | ||||||| ||| ||||||| ||||    
T  27840556 aactagttacaaacccgtgctttgcacgggttgaataacgtatcttgtaaaaaaattattccaaaagaaa 27840487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 12960649 - 12960597
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  12960649 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 12960597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 39278282 - 39278238
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||    
T  39278282 taaactagttacaaacccgtgcttcgcacgggttgaataacgtat 39278238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 691332 - 691289
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  691332 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 691289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 21669230 - 21669273
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  21669230 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 21669273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 31896813 - 31896855
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  31896813 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 31896855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 39647981 - 39648023
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  39647981 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 39648023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 46200733 - 46200663
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggta-tgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| || |||||||||||||||| ||| | | ||||||| ||| ||| |||||||||    
T  46200733 actagttacaaacccatgctccgcacgggttgaataatgtatttttgtaaaaaaattattctaaaggaaaa 46200663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 9151463 - 9151419
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||| ||||||||||||| | ||||||||||||||||||| ||||    
T  9151463 taaattagttacaaacccgtgcttcgcacgggttgaataacgtat 9151419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 15595466 - 15595430
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||| | |||||||||||||||||||    
T  15595466 actagttacaaacccgtgcttcgcacgggttgaataa 15595430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 33300710 - 33300640
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| ||||||||||||||||||||  |||| | ||||||| |||||| ||||||||||    
T  33300710 aactagttacaaacccgtacttcgcacgggttgaatatcgtatattgtaaaaatattgtttcaaaggaaaa 33300640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 2624721 - 2624791
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | | ||||||||||||||||| |||| | ||||||| |||||| ||||||||||    
T  2624721 aactagttacaaacccgtgcatcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaaggaaaa 2624791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 5753125 - 5753178
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| | |||||||    
T  5753125 aaactagttacaaacccgtacttcgcacgggttgaataacgtatattgtaaaaa 5753178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 22975736 - 22975787
Alignment:
Q  24 cttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||||||||    
T  22975736 cttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaa 22975787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 23812665 - 23812614
Alignment:
Q  24 cttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||||||||    
T  23812665 cttcgcacgggttgaataacgtatcttgtaaaaaaattgttccaaaggaaaa 23812614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 1932382 - 1932312
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | ||||||||||||||||||  |||| | |||||||  ||||||||||| ||||    
T  1932382 aactagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaagaaaaa 1932312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 18389166 - 18389219
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  18389166 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 18389219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 33319092 - 33319039
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  33319092 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 33319039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 4425951 - 4425880
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| |  |||||||||||||| ||| |||| | ||||||| ||| |||||||| ||||    
T  4425951 aaactagttacaaacccgtgtttcgcacgggttgactaacgtatcttgtaaaaaaattattccaaagaaaaa 4425880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 6966235 - 6966278
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  6966235 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 6966278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 24447838 - 24447795
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  24447838 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 24447795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 1615103 - 1615168
Alignment:
Q  10 gttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||| |||| |||||||||||| | |||| |  ||||| |||||||| |||||||||    
T  1615103 gttacaaacccatgcttcacacgggttgaattacgtattttctaaaatgattgttctaaaggaaaa 1615168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 4110102 - 4110061
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  4110102 actagttacaaacccgtgcttcgcacgggttgaataacgtat 4110061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 11272804 - 11272735
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    ||||||||||||| || | ||||||||| ||||||||| |||| | ||||||| |||||| |||| ||||    
T  11272804 aactagttacaaatccgtgcttcgcacgagttgaataatgtatcttgtaaaaaaattgtttcaaaagaaa 11272735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 11681668 - 11681704
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  11681668 aaactagttacaaacccgtgcttcgcacgggttgaat 11681704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 18985190 - 18985226
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  18985190 aaactagttacaaacccgtgcttcgcacgggttgaat 18985226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 52690 - 52762
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  52690 taaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 52762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 12249910 - 12249981
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  12249910 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 12249981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 23626054 - 23626125
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  23626054 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 23626125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 39445297 - 39445226
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  39445297 aaactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 39445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 32569575 - 32569646
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | ||||||||||||||||| | |||| |  ||||| |||||||| |||||||||    
T  32569575 aaactagttacaaacccgtgcttcgcacgggttgaattacgtattttctaaaatgattgttctaaaggaaaa 32569646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 2961008 - 2961060
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  2961008 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 2961060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 18375557 - 18375599
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  18375557 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 18375599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 27244398 - 27244432
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| |||||||||||||||||    
T  27244398 actagttacaaacccatgcttcgcacgggttgaat 27244432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 27272728 - 27272686
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  27272728 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 27272686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 36778522 - 36778480
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  36778522 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 36778480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 41158686 - 41158644
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  41158686 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 41158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 41908053 - 41908015
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  41908053 aaactagttacaaacccgtgcttcgcacgggttgaataa 41908015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7391364 - 7391327
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  7391364 aactagttacaaacccgtgcttcgcacgggttgaataa 7391327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 25346037 - 25345996
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| |||||||||| |||||||| ||||    
T  25346037 actagttacaaacccatgcttcgcacggattgaataacgtat 25345996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 40586443 - 40586484
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  40586443 actagttacaaacccgtgcttcgcacgggttgaataacgtat 40586484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 2680234 - 2680270
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  2680234 aaactagttacaaacccgtgcttcgcacgggttgaat 2680270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 8160417 - 8160461
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  8160417 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8160461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 8763057 - 8763013
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  8763057 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 8763013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 27273922 - 27273878
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||| ||||| ||||    
T  27273922 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 27273878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 5241031 - 5240960
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||| | ||||||||||||||||||| || | | ||||||| ||||||| |||||||||    
T  5241031 aaactagttacaaacccgtgcttcgcacgggttgaataacgtgttttgtaaaaaaattgttctaaaggaaaa 5240960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 30766547 - 30766478
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||  | ||||||||||||||||||| |||| | ||||||  |||||||||||||||||    
T  30766547 actagttacaaacctgtgcttcgcacgggttgaataacgtatcttgtaaaacaattgttccaaaggaaaa 30766478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 12157707 - 12157778
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||| || |||||||||||||||||||   ||||   ||||||| |||||||||||||||||    
T  12157707 aaactagttacaaatccgtacttcgcacgggttgaatttcgtatcctgtaaaaaaattgttccaaaggaaaa 12157778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 11950990 - 11951032
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  11950990 aactagttacaaacccatgcttcgcacgggttgaataacgtat 11951032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 22759056 - 22759126
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | |||||||||||||||| ||  ||| | ||||||| |||||| ||||||||||    
T  22759056 aactagttacaaacccgtgcttcgcacgggttgaagaacatattttgtaaaaaaattgtttcaaaggaaaa 22759126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 188777 - 188709
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    ||||||||||||||| | ||||||||||||||||||| |||| | ||||||| | | ||||||| ||||    
T  188777 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaaatattccaaaagaaa 188709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 8396809 - 8396766
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  8396809 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 8396766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 22477949 - 22477906
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  22477949 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 22477906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 4137399 - 4137441
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  4137399 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 4137441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 18688716 - 18688674
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  18688716 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 18688674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 26100777 - 26100819
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  26100777 aactagttacaaacccgtgcttcgcacgggttgaataatgtat 26100819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 26776432 - 26776470
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  26776432 aaactagttacaaacccgtgcttcgcacgggttgaataa 26776470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 35861044 - 35861002
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  35861044 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 35861002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 21165930 - 21165967
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  21165930 aactagttacaaacccgtgcttcgcacgggttgaataa 21165967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 44186859 - 44186928
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| | ||||||||| ||| ||||| |||  | ||||||| ||||||||||| |||||    
T  44186859 actagttacaaacccgtgcttcgcacgagttcaataacgtaacttgtaaaaatattgttccaaacgaaaa 44186928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 16496416 - 16496348
Alignment:
Q  8 tagttacaaacccatacttcgcacgggttgaataaggtatgtggt-aaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||| | |||||||||||||||||||  ||| | || ||||| ||| |||||||||||||    
T  16496416 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaa 16496348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 22522312 - 22522276
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataa 42  Q
    ||||||||||||||| | |||||||||||||||||||    
T  22522312 actagttacaaacccgtgcttcgcacgggttgaataa 22522276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 41053847 - 41053811
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  41053847 aaactagttacaaacccgtgcttcgcacgggttgaat 41053811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 50742340 - 50742296
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||||||||||||| ||||| ||||    
T  50742340 taaactagttacaaacccgtgcttcgcacgggttcaataacgtat 50742296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 9702751 - 9702681
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||| | |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  9702751 aactagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaatttgttccaaaggaaaa 9702681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 42819330 - 42819400
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggt-aaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| | ||||||||||||||||||| |||| | || ||||| |||||||||||||||||    
T  42819330 actagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaaattgttccaaaggaaaa 42819400  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 22602634 - 22602703
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | ||||||| ||| ||||||| ||||    
T  22602634 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattattccaaaagaaa 22602703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 32977100 - 32977171
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||  | ||||||||||||||||||| |||| | ||||||| |||||| ||||| ||||    
T  32977100 aaactagttacaaaccggtgcttcgcacgggttgaataacgtatcttgtaaaaaaattgtttcaaagaaaaa 32977171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 36366123 - 36366193
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaa 74  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | ||||||| ||| ||| ||| ||||    
T  36366123 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaaaattattcgaaaagaaa 36366193  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 7863528 - 7863580
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  7863528 aactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 7863580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 9809820 - 9809872
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  9809820 aactagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaa 9809872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8350292 - 8350221
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggt-aaaaagattgttccaaaggaaaa 75  Q
    ||||||||| |||||| | ||||| ||||||||||||| |||| | || ||||| |||||||||||||||||    
T  8350292 aactagttataaacccgtgcttcgtacgggttgaataacgtatcttgtaaaaaaaattgttccaaaggaaaa 8350221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 12702061 - 12702112
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  12702061 actagttacaaacccgtgcttcgcacgggttgaataatgtatcttgtaaaaa 12702112  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 2366839 - 2366909
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    |||||||||||||||  |  |||||||||||||||||| |||| | ||||||| ||| ||| |||||||||    
T  2366839 aactagttacaaacctgtgtttcgcacgggttgaataacgtatcttgtaaaaaaattattctaaaggaaaa 2366909  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 34719500 - 34719458
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  34719500 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 34719458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 3086433 - 3086474
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  3086433 actagttacaaacccgtgcttcgcacgggttgaataacgtat 3086474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 5620643 - 5620680
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  5620643 aactagttacaaacccgtgcttcgcacgggttgaataa 5620680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 25695539 - 25695580
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  25695539 actagttacaaacccgtgcttcgcacgggttgaataacgtat 25695580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 752053 - 752097
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  752053 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 752097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 1685046 - 1685082
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  1685046 aaactagttacaaacccgtgcttcgcacgggttgaat 1685082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 13596962 - 13596926
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaat 40  Q
    ||||||||||||||||| | |||||||||||||||||    
T  13596962 aaactagttacaaacccgtgcttcgcacgggttgaat 13596926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 61754 - 61685
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| | ||||||||||||||||||  |||| | |||||||  ||||||||||||||||    
T  61754 actagttacaaacccgtgcttcgcacgggttgaatatcgtatcttgtaaaaaatttgttccaaaggaaaa 61685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 24917 - 24970
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  24917 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 24970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 7364823 - 7364770
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    ||||||||||||||||| | ||||||||||||||||||| |||| | |||||||    
T  7364823 aaactagttacaaacccgtgcttcgcacgggttgaataacgtatcttgtaaaaa 7364770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 25124044 - 25124113
Alignment:
Q  6 actagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||| | ||||||||||||||||| |  ||| | ||||||| |||||| ||||||||||    
T  25124044 actagttacaaacccgtgcttcgcacgggttgaattacatatcttgtaaaaaaattgtttcaaaggaaaa 25124113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 30922096 - 30922173
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaatattat 81  Q
    ||||||||||||||||| | |||| |||||||||||| | |||| | |||||||  |||||| |||| ||||||||||    
T  30922096 aaactagttacaaacccgtgcttcacacgggttgaattacgtatcttgtaaaaaatttgttctaaagaaaaatattat 30922173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 16884271 - 16884220
Alignment:
Q  24 cttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||| ||||    
T  16884271 cttcgcacgggttgaataacgtattttgtaaaaaaattgttccaaagaaaaa 16884220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 17041961 - 17041910
Alignment:
Q  24 cttcgcacgggttgaataaggtatgtggtaaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||||||||| |||| | ||||||| |||||||||||| ||||    
T  17041961 cttcgcacgggttgaataacgtattttgtaaaaaaattgttccaaagaaaaa 17041910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 4289027 - 4289069
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  4289027 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 4289069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 9542629 - 9542666
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||| | |||||||||||||||||||    
T  9542629 aactagttacaaacccgtgcttcgcacgggttgaataa 9542666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 28609997 - 28609953
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||||| | ||| ||||||||||||||| ||||    
T  28609997 taaactagttacaaacccgtgctttgcacgggttgaataacgtat 28609953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 8173 - 8212
Alignment:
Q  3 taaactagttacaaacccatacttcgcacgggttgaataa 42  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  8173 taaactagttacaaacccgtgcttcgcacgggttgaataa 8212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 14691 - 14648
Alignment:
Q  4 aaactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  14691 aaactagttacaaacccgtgcttcgcacgggttgaataacgtat 14648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 17400 - 17442
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtat 47  Q
    |||||||||||||||| | ||||||||||||||||||| ||||    
T  17400 aactagttacaaacccgtgcttcgcacgggttgaataacgtat 17442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 143213 - 143265
Alignment:
Q  5 aactagttacaaacccatacttcgcacgggttgaataaggtatgtggtaaaaa 57  Q
    |||||||||||||||| | |||||||| |||||||||| |||| || ||||||    
T  143213 aactagttacaaacccgtgcttcgcacaggttgaataacgtatatgttaaaaa 143265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 151883 - 151951
Alignment:
Q  8 tagttacaaacccatacttcgcacgggttgaataaggtatgtggt-aaaaagattgttccaaaggaaaa 75  Q
    ||||||||||||| | |||||||||||||||||||  ||| | || ||||| ||| |||||||||||||    
T  151883 tagttacaaacccgtgcttcgcacgggttgaataacatatcttgtaaaaaaaattattccaaaggaaaa 151951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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