View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16241_low_1 (Length: 665)

Name: NF16241_low_1
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16241_low_1
NF16241_low_1
[»] chr8 (2 HSPs)
chr8 (19-559)||(12401015-12401553)
chr8 (624-660)||(12401618-12401654)
[»] chr7 (2 HSPs)
chr7 (476-517)||(24966009-24966050)
chr7 (22-103)||(28638704-28638785)
[»] chr1 (4 HSPs)
chr1 (476-517)||(10663118-10663159)
chr1 (485-523)||(31625963-31626001)
chr1 (476-524)||(38221482-38221530)
chr1 (484-520)||(40188831-40188867)
[»] chr6 (1 HSPs)
chr6 (484-523)||(9024045-9024084)
[»] chr2 (1 HSPs)
chr2 (476-523)||(36159456-36159503)
[»] chr4 (1 HSPs)
chr4 (428-464)||(24001565-24001601)


Alignment Details
Target: chr8 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 12401015 - 12401553
Alignment:
Q  19 aactcagtattttctttgaaaatctctggtgttattcctttcaaactttcactactaatccttggaggaattgaagttagtctctttggccactttgata 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12401015 aactcagtattttctttgaacatctctggtgttattcctttcaaactttcaccactaatccttggaggaattgaagttagtctctttggccactttgata 12401114  T
Q  119 tttctccaccagcaacttctttgacgttgtttacatctggcagtggggtcaagcaggtatctagtttagtgtacctgcaatgaaaaaggttgatgtaata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12401115 tttctccaccagcaacttctttgacgttgtttacatctggcagtggggtcaagcaggtatctagtttagtgtacctgcaatcaaaaaggttgatgtaata 12401214  T
Q  219 aacaatttaaagaaaaatgtacatatgttagaacttaactcgatcatacaaaaccgactaataagatgagagatgtttatcacttataaacacattattc 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12401215 aacaatttaaagaaaaatgtacatctgttagaacttaactcgatcatacaaaaccgactaataagatgagagatgtttatcacttataaacacattattc 12401314  T
Q  319 aagccatatccgcatcaaatgtgggattttcaatattatttcctcatgcctaagactggacatctggagcgtaacttgactgacctgatagcggatggac 418  Q
    | ||||||| |||||||||||||||||||| || |||| |  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |    
T  12401315 aggccatat-cgcatcaaatgtgggattttgaacatta-tcactcatgcctaagactagacatctggagcgtagcttgactgacctgatagcggatggtc 12401412  T
Q  419 caacaaattttggatagactctcatactatctcagaatttgggttgagttaaaagttaaaaccaacttgtaaggtaagagatgtctcccacttataaaca 518  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12401413 caacaaattttggatagactctcaaactatctcagaatttgggttgagttaaaagttaaaaccaacttgtaaggtaagagatgtctctcacttataaaca 12401512  T
Q  519 catttcacacaatattcaatcgaatgcgatactcttaaccg 559  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  12401513 catttcacacaatattcaatccaatgcgatactcttaaccg 12401553  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 624 - 660
Target Start/End: Original strand, 12401618 - 12401654
Alignment:
Q  624 gtgttattaccaagccatatctggatcctatgcttct 660  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12401618 gtgttattaccaagccatatctggatcctgtgcttct 12401654  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 517
Target Start/End: Original strand, 24966009 - 24966050
Alignment:
Q  476 aaaaccaacttgtaaggtaagagatgtctcccacttataaac 517  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  24966009 aaaaccaacgtgtaaggtgagagatgtctcccacttataaac 24966050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 28638704 - 28638785
Alignment:
Q  22 tcagtattttctttgaaaatctctggtgttattcctttcaaactttcactactaatccttggaggaattgaagttagtctct 103  Q
    ||||| ||||||||||| ||||| | ||| ||||| | ||||||| |||| ||||||||||| |||| ||| ||||||||||    
T  28638704 tcagtgttttctttgaacatctcagctgtgattccatccaaacttccactgctaatccttggtggaactgatgttagtctct 28638785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 517
Target Start/End: Complemental strand, 10663159 - 10663118
Alignment:
Q  476 aaaaccaacttgtaaggtaagagatgtctcccacttataaac 517  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  10663159 aaaaccaacttgtaaggtgagaaatgtctcccacttataaac 10663118  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 485 - 523
Target Start/End: Original strand, 31625963 - 31626001
Alignment:
Q  485 ttgtaaggtaagagatgtctcccacttataaacacattt 523  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  31625963 ttgtaaggtgagagatgcctcccacttataaacacattt 31626001  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 38221530 - 38221482
Alignment:
Q  476 aaaaccaacttgtaaggtaagagatgtctcccacttataaacacatttc 524  Q
    |||| ||||||||||||| || ||||||||||||||| ||| |||||||    
T  38221530 aaaaacaacttgtaaggtgagggatgtctcccacttaaaaatacatttc 38221482  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 40188867 - 40188831
Alignment:
Q  484 cttgtaaggtaagagatgtctcccacttataaacaca 520  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  40188867 cttgtaaggtaagagatgcctcccacttataagcaca 40188831  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 523
Target Start/End: Complemental strand, 9024084 - 9024045
Alignment:
Q  484 cttgtaaggtaagagatgtctcccacttataaacacattt 523  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  9024084 cttgtaagggaagagatgtctcgcacttataaacacattt 9024045  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 523
Target Start/End: Complemental strand, 36159503 - 36159456
Alignment:
Q  476 aaaaccaacttgtaaggtaagagatgtctcccacttataaacacattt 523  Q
    |||||| ||||||||||| |||||||||||| || |||||||||||||    
T  36159503 aaaaccgacttgtaaggtgagagatgtctcctacgtataaacacattt 36159456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 428 - 464
Target Start/End: Complemental strand, 24001601 - 24001565
Alignment:
Q  428 ttggatagactctcatactatctcagaatttgggttg 464  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  24001601 ttggatagactctgatactatcttagaatttgggttg 24001565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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