View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16241_low_15 (Length: 247)
Name: NF16241_low_15
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 25897928 - 25897697
Alignment:
| Q |
1 |
tttagttaaattttacttatttttcgaccaaattcatactattagttaaaatgttttttcggtcacattctaggtgtgaaaagaatgaaagnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25897928 |
tttagttaaattttacttatttttcgaccaaattcatactattagttaaaatgttttttcggtcacattctaggtgtgaaaagaatgaaaaaaaaaaaaa |
25897829 |
T |
|
| Q |
101 |
---tccgatgaattttatacaagtctttaatatttataaaccaacatttgttgaacacccttgaatgctgaccaatcttatataacccacaaatgttgag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25897828 |
aaatccgatgaattttatacaagtctttaatatttataaaccaacatttgttgaacacccttgaatgctgaccaatcttatataacccacaaatgttgag |
25897729 |
T |
|
| Q |
198 |
gactgatcactggtgcagtgtgatgtggggca |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25897728 |
gactgatcactggtgcagtgtgatgtggggca |
25897697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University