View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16241_low_17 (Length: 207)

Name: NF16241_low_17
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16241_low_17
NF16241_low_17
[»] chr3 (31 HSPs)
chr3 (17-192)||(52923368-52923541)
chr3 (133-191)||(6954950-6955008)
chr3 (120-192)||(9998230-9998302)
chr3 (120-192)||(10232834-10232906)
chr3 (133-192)||(21431402-21431461)
chr3 (133-192)||(32701275-32701334)
chr3 (120-192)||(10108002-10108074)
chr3 (133-192)||(45568697-45568756)
chr3 (133-192)||(47895928-47895987)
chr3 (133-192)||(48650988-48651047)
chr3 (133-192)||(10229251-10229310)
chr3 (137-192)||(40487106-40487161)
chr3 (133-192)||(40556488-40556547)
chr3 (133-190)||(35865188-35865245)
chr3 (135-192)||(38545614-38545671)
chr3 (137-192)||(47042305-47042360)
chr3 (139-192)||(9797780-9797833)
chr3 (136-192)||(33579648-33579704)
chr3 (149-192)||(12050901-12050944)
chr3 (133-192)||(36461684-36461743)
chr3 (133-192)||(43016632-43016691)
chr3 (133-192)||(43488850-43488909)
chr3 (134-189)||(21534064-21534119)
chr3 (137-192)||(31272060-31272115)
chr3 (133-181)||(36910919-36910967)
chr3 (148-192)||(37040574-37040618)
chr3 (134-182)||(46220456-46220504)
chr3 (133-192)||(7449155-7449213)
chr3 (133-192)||(7457297-7457355)
chr3 (133-180)||(20988020-20988067)
chr3 (132-192)||(953660-953720)
[»] chr2 (26 HSPs)
chr2 (133-192)||(27097658-27097717)
chr2 (133-192)||(7646259-7646318)
chr2 (133-192)||(7448035-7448094)
chr2 (133-192)||(4778540-4778599)
chr2 (133-192)||(12677549-12677608)
chr2 (134-192)||(1421459-1421517)
chr2 (137-189)||(9169513-9169565)
chr2 (133-192)||(4098890-4098949)
chr2 (137-192)||(31788247-31788302)
chr2 (133-192)||(35220118-35220177)
chr2 (149-189)||(7678134-7678174)
chr2 (133-189)||(36943380-36943436)
chr2 (149-192)||(5428121-5428164)
chr2 (133-192)||(43397372-43397431)
chr2 (133-182)||(11985493-11985542)
chr2 (134-189)||(31129004-31129059)
chr2 (150-192)||(37876851-37876893)
chr2 (149-186)||(8809085-8809122)
chr2 (149-186)||(18763271-18763308)
chr2 (149-189)||(4904392-4904432)
chr2 (149-192)||(4042230-4042273)
chr2 (132-186)||(36691652-36691707)
chr2 (161-192)||(38444982-38445013)
chr2 (149-179)||(8809006-8809036)
chr2 (149-182)||(29279833-29279866)
chr2 (132-185)||(42698935-42698988)
[»] chr8 (17 HSPs)
chr8 (133-192)||(10377476-10377535)
chr8 (133-192)||(31013822-31013881)
chr8 (133-192)||(45446062-45446121)
chr8 (133-192)||(27110715-27110774)
chr8 (134-192)||(17693864-17693922)
chr8 (132-192)||(25191317-25191377)
chr8 (133-192)||(8412600-8412659)
chr8 (149-192)||(23230439-23230482)
chr8 (132-192)||(37971073-37971133)
chr8 (134-185)||(3673226-3673277)
chr8 (134-189)||(40211560-40211615)
chr8 (135-192)||(20559995-20560052)
chr8 (135-192)||(20571557-20571614)
chr8 (151-192)||(33214882-33214923)
chr8 (149-192)||(29937910-29937953)
chr8 (135-192)||(20553496-20553553)
chr8 (151-183)||(24186921-24186953)
[»] chr6 (15 HSPs)
chr6 (133-192)||(33053421-33053480)
chr6 (134-192)||(605983-606041)
chr6 (134-192)||(9723632-9723690)
chr6 (119-192)||(23128382-23128455)
chr6 (133-192)||(68253-68312)
chr6 (133-192)||(3913826-3913885)
chr6 (133-192)||(12170273-12170332)
chr6 (137-192)||(9721763-9721818)
chr6 (133-192)||(32328836-32328895)
chr6 (134-192)||(9719645-9719703)
chr6 (138-192)||(29255695-29255749)
chr6 (154-192)||(29320115-29320153)
chr6 (149-192)||(7515455-7515498)
chr6 (135-192)||(14846317-14846373)
chr6 (132-189)||(30894415-30894470)
[»] scaffold0088 (1 HSPs)
scaffold0088 (133-192)||(50563-50622)
[»] scaffold0026 (1 HSPs)
scaffold0026 (133-192)||(72117-72176)
[»] chr5 (19 HSPs)
chr5 (133-192)||(13007005-13007064)
chr5 (133-192)||(38597574-38597633)
chr5 (135-192)||(6012391-6012448)
chr5 (120-192)||(26825192-26825264)
chr5 (133-192)||(11977190-11977249)
chr5 (133-192)||(25979934-25979993)
chr5 (119-192)||(9113978-9114051)
chr5 (133-192)||(7036004-7036063)
chr5 (132-186)||(7929974-7930028)
chr5 (142-192)||(34945207-34945257)
chr5 (139-192)||(38007140-38007193)
chr5 (133-192)||(24230039-24230099)
chr5 (149-192)||(11074153-11074196)
chr5 (133-192)||(15571262-15571321)
chr5 (149-192)||(26878331-26878374)
chr5 (134-192)||(31392010-31392068)
chr5 (133-189)||(4770914-4770970)
chr5 (137-192)||(13421724-13421779)
chr5 (148-189)||(8096752-8096793)
[»] chr1 (21 HSPs)
chr1 (133-192)||(7337916-7337975)
chr1 (133-192)||(35484631-35484690)
chr1 (133-192)||(34878524-34878583)
chr1 (149-192)||(41176978-41177021)
chr1 (134-192)||(26535181-26535239)
chr1 (149-192)||(29738889-29738932)
chr1 (134-189)||(35462294-35462349)
chr1 (133-193)||(51916904-51916964)
chr1 (149-192)||(10776713-10776756)
chr1 (149-192)||(11462701-11462744)
chr1 (149-192)||(31983976-31984019)
chr1 (134-189)||(45415340-45415395)
chr1 (134-192)||(1742062-1742120)
chr1 (152-192)||(7837019-7837059)
chr1 (149-192)||(5983632-5983675)
chr1 (134-192)||(14872420-14872478)
chr1 (134-192)||(21947871-21947928)
chr1 (132-186)||(27456319-27456373)
chr1 (149-189)||(4413100-4413140)
chr1 (132-192)||(15435125-15435185)
chr1 (132-192)||(44915424-44915484)
[»] chr4 (23 HSPs)
chr4 (134-192)||(2520575-2520633)
chr4 (133-190)||(22610981-22611038)
chr4 (133-192)||(13633911-13633970)
chr4 (133-192)||(19853764-19853823)
chr4 (133-192)||(53810825-53810884)
chr4 (133-192)||(4143007-4143066)
chr4 (133-192)||(26633923-26633982)
chr4 (133-192)||(35348103-35348162)
chr4 (134-192)||(10496140-10496198)
chr4 (133-192)||(21686493-21686552)
chr4 (149-192)||(22558718-22558761)
chr4 (149-192)||(51024714-51024757)
chr4 (133-192)||(32766310-32766370)
chr4 (133-192)||(24099324-24099383)
chr4 (149-192)||(26091166-26091209)
chr4 (149-192)||(29961182-29961225)
chr4 (133-188)||(48257706-48257761)
chr4 (149-192)||(56156806-56156849)
chr4 (151-189)||(10259150-10259188)
chr4 (136-192)||(9165296-9165352)
chr4 (149-192)||(43510012-43510055)
chr4 (151-192)||(43126694-43126735)
chr4 (151-192)||(53443941-53443982)
[»] chr7 (21 HSPs)
chr7 (136-191)||(34899858-34899913)
chr7 (135-192)||(42978389-42978446)
chr7 (149-192)||(12141561-12141604)
chr7 (133-192)||(40992961-40993020)
chr7 (134-192)||(37837711-37837769)
chr7 (135-193)||(45350444-45350502)
chr7 (137-192)||(9450390-9450445)
chr7 (133-192)||(30757072-30757131)
chr7 (149-192)||(48061217-48061260)
chr7 (134-192)||(48317065-48317123)
chr7 (133-189)||(9915924-9915979)
chr7 (133-189)||(9923836-9923891)
chr7 (133-192)||(38798571-38798628)
chr7 (133-192)||(8013718-8013777)
chr7 (133-192)||(13797184-13797243)
chr7 (133-192)||(39171845-39171904)
chr7 (118-192)||(19296642-19296716)
chr7 (154-192)||(24770055-24770093)
chr7 (135-193)||(47590095-47590153)
chr7 (134-185)||(19405014-19405065)
chr7 (137-192)||(39329046-39329101)
[»] scaffold0127 (1 HSPs)
scaffold0127 (133-190)||(15269-15326)
[»] scaffold0017 (1 HSPs)
scaffold0017 (133-189)||(33004-33060)
[»] scaffold0884 (1 HSPs)
scaffold0884 (149-192)||(2225-2268)
[»] scaffold0219 (1 HSPs)
scaffold0219 (133-192)||(15091-15150)
[»] scaffold0445 (1 HSPs)
scaffold0445 (133-192)||(1121-1180)
[»] scaffold0121 (1 HSPs)
scaffold0121 (151-192)||(31524-31565)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 52923541 - 52923368
Alignment:
Q  17 aacagatgcgtacaaatgttatttttgacaaatttatttttgagaatatcatttcaaagaatgtaatttcatgtattgaaaccaacacgatagaataatt 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  52923541 aacagatgcgtaaaaatgttatttttgacaaatttatttttgagaatatcatttcaaagaatgtaatttcatgtattgaaaccaacacgatagaataa-- 52923444  T
Q  117 tttgtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52923443 tttgtgttagacgaccctatttttttagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 52923368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 6955008 - 6954950
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6955008 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttca 6954950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 9998230 - 9998302
Alignment:
Q  120 gtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9998230 gtgttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 9998302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 10232834 - 10232906
Alignment:
Q  120 gtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10232834 gtgttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 10232906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 21431402 - 21431461
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21431402 ctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 21431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 32701275 - 32701334
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32701275 ctagttttctagtggaagaaactccaacttctctttaaactttctttctccttcgttcat 32701334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 10108002 - 10108074
Alignment:
Q  120 gtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  10108002 gtgttagccgaccctagttttctagtgggagaaactccaacttctctctaaactttctttctcctttgttcat 10108074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 45568756 - 45568697
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  45568756 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 45568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 47895928 - 47895987
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  47895928 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 47895987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 48651047 - 48650988
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  48651047 ctagttttctagtgaaagaaactccaacttctctctaaactttctttctccatcgttcat 48650988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 10229251 - 10229310
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  10229251 ctagttttctagtgggagaaactccaatttctctctaaactttctttctccttctttcat 10229310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 40487106 - 40487161
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  40487106 ttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 40487161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 40556488 - 40556547
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||    
T  40556488 ctagttttctagtgggagaaactccaacttctttctaaactttctttctcattcgttcat 40556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 35865245 - 35865188
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttc 190  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  35865245 ctagttttctagtgagagaaacttcaacttctctctaaactttctttctccttcgttc 35865188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 38545614 - 38545671
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||    
T  38545614 agttttctagtgagagaaacttcaacttctctctaaactttctttctccttcgttcat 38545671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 47042360 - 47042305
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  47042360 ttttctagtgaaagaaactccaacttctctctaaactttatttatccttcgttcat 47042305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 9797833 - 9797780
Alignment:
Q  139 ttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  9797833 ttctagtgagagaaactccaacttctctctaaactttatttctccttcgttcat 9797780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 33579648 - 33579704
Alignment:
Q  136 gttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||  ||||||| ||||||||||||||||||||||| ||||||||||||    
T  33579648 gttttctagtgagagaaacttcaacttctctctaaactttctttatccttcgttcat 33579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 12050944 - 12050901
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  12050944 agaaactccaacttctctctaaattttctttctccttcgttcat 12050901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 36461743 - 36461684
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||| ||  ||||||||||||||||||||||||||||||||    
T  36461743 ctagttttctagtgtgagaaacttcatattctctctaaactttctttctccttcgttcat 36461684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 43016632 - 43016691
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| |||||||||||||| |||||||||| |||||||||    
T  43016632 ctagttttctagtgagagaaactctaacttctctctaaattttctttctctttcgttcat 43016691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 43488909 - 43488850
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||  ||||||| |||||||||||||||||||||||||||||| |||||    
T  43488909 ctagttttttagtgagagaaacttcaacttctctctaaactttctttctccttcattcat 43488850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 21534119 - 21534064
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||| |||||  |||||||| || |||||||||||||||||||||||||||||    
T  21534119 tagttttttagtgagagaaactctaatttctctctaaactttctttctccttcgtt 21534064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 31272115 - 31272060
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  ||||||||||||||||||||||  ||||||| ||||||||||||    
T  31272115 ttttctagtgagagaaactccaacttctctctaagttttctttttccttcgttcat 31272060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 36910967 - 36910919
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttct 181  Q
    ||||||||||||||  |||||||||||||||||| |||||||| |||||    
T  36910967 ctagttttctagtgagagaaactccaacttctctataaactttttttct 36910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 37040574 - 37040618
Alignment:
Q  148 aagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  37040574 aagaaactcaaacttctttctaaactttctttctctttcgttcat 37040618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 46220456 - 46220504
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctc 182  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||    
T  46220456 tagttttctagtgatagaaactataacttctctctaaactttctttctc 46220504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 7449213 - 7449155
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||| |||||| |||||||||    
T  7449213 ctagttttctaatgagagaaactccaacttctctc-aaactttttttctctttcgttcat 7449155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 7457355 - 7457297
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||| ||  ||||||||||||||||||| ||||||| |||||| |||||||||    
T  7457355 ctagttttctaatgagagaaactccaacttctctc-aaactttttttctctttcgttcat 7457297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 20988067 - 20988020
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttc 180  Q
    |||||||| |||||  |||||||||||||||||||||||||| |||||    
T  20988067 ctagttttttagtgagagaaactccaacttctctctaaacttcctttc 20988020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 953720 - 953660
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| |||||  ||||||||||  ||||||||||  |||||||||||||| |||||    
T  953720 tctagttttatagtgagagaaactccacattctctctaagttttctttctccttcattcat 953660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 27097717 - 27097658
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27097717 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 27097658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 7646259 - 7646318
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7646259 ctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 7646318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 7448035 - 7448094
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7448035 ctagttttctagtgggagaaactccaacttctctctaaactttctttttccttcgttcat 7448094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 4778540 - 4778599
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  4778540 ctagttttttagtgggagaaactccaacttctttctaaactttctttctccttcgttcat 4778599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 12677608 - 12677549
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  12677608 ctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttgttcat 12677549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 1421459 - 1421517
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  1421459 tagttttctagtgagagaaactccaacttctcgctaaactttctttctccttcgttcat 1421517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 9169565 - 9169513
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  9169565 ttttctagtgggagaaactccaacttctctctaaactttctttctcattcgtt 9169513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 4098890 - 4098949
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  4098890 ctagttttttagtgggagaaactccaacttctctctaaactttctttctctttccttcat 4098949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 31788247 - 31788302
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  31788247 ttttctagtgagagaaactccaacttctctctaaactttctttcttcttcgttcat 31788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 35220118 - 35220177
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||||||| |||||    
T  35220118 ctagttttctagtgagagaaactccaacctctctctaaactttctttctccttcattcat 35220177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7678174 - 7678134
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7678174 agaaactccaacttctctctaaactttctttctccttcgtt 7678134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 36943436 - 36943380
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||    
T  36943436 ctagttttctagtgagagaaactccaatttatctctaaactttctttctccttcgtt 36943380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 5428164 - 5428121
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  5428164 agaaactccaacttctctctaaattttctttctccttcgttcat 5428121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 43397431 - 43397372
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||| | ||||||||||    
T  43397431 ctagttttctagtgagagaaactccaacttctctttaaactttcttttttcttcgttcat 43397372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 11985542 - 11985493
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctc 182  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  11985542 ctagttttctaatgagagaaactccaacttctctctaaactttctttctc 11985493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 31129059 - 31129004
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||| |||||  | ||||| |||||||||||||||||||||||||||||||||    
T  31129059 tagttttttagtgagaaaaacttcaacttctctctaaactttctttctccttcgtt 31129004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 37876893 - 37876851
Alignment:
Q  150 gaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||| ||||||||||||||||||||||||||| ||||||||||    
T  37876893 gaaattccaacttctctctaaactttctttcttcttcgttcat 37876851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 8809085 - 8809122
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttc 186  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8809085 agaaactctaacttctctctaaactttctttctccttc 8809122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 18763271 - 18763308
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttc 186  Q
    |||||||||||||||||||||||||||||||| |||||    
T  18763271 agaaactccaacttctctctaaactttctttcaccttc 18763308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 4904432 - 4904392
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  4904432 agaaacttcaacttctctctaaactttctttctcattcgtt 4904392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 4042273 - 4042230
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||    
T  4042273 agaaactccaacttctctctaaactttttttctcattccttcat 4042230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 36691652 - 36691707
Alignment:
Q  132 tctagttttctagtggaagaaactccaac-ttctctctaaactttctttctccttc 186  Q
    |||||||||||||||  |||||||||||| |||| ||||||| |||||||||||||    
T  36691652 tctagttttctagtgagagaaactccaactttctttctaaaccttctttctccttc 36691707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 192
Target Start/End: Original strand, 38444982 - 38445013
Alignment:
Q  161 ttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||    
T  38444982 ttctctctaaactttctttctccttcgttcat 38445013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 8809006 - 8809036
Alignment:
Q  149 agaaactccaacttctctctaaactttcttt 179  Q
    |||||||||||||||||||||||||||||||    
T  8809006 agaaactccaacttctctctaaactttcttt 8809036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 29279866 - 29279833
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctc 182  Q
    |||||||||||||||||||||| |||||||||||    
T  29279866 agaaactccaacttctctctaacctttctttctc 29279833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 42698988 - 42698935
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctcctt 185  Q
    |||| |||| |||||  ||||||| |||||||| ||||||||||||||||||||    
T  42698988 tctaattttttagtgagagaaacttcaacttctttctaaactttctttctcctt 42698935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 10377476 - 10377535
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10377476 ctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 10377535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 31013881 - 31013822
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  31013881 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 31013822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 45446121 - 45446062
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  45446121 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 45446062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 27110774 - 27110715
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  27110774 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcattcat 27110715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 17693922 - 17693864
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  17693922 tagttttttagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 17693864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 25191377 - 25191317
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  25191377 tctagttttttagtgagagaaactccaacttctctctaaactttctttctcctttgttcat 25191317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 8412659 - 8412600
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||||||    
T  8412659 ctagttttctagtgagagaaactctaacttctctctaaactttctttctcattcgttcat 8412600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 23230439 - 23230482
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23230439 agaaactccaacttctctctaaactttctttctccttcgttcat 23230482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 37971073 - 37971133
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||| ||  ||||||||||||||||||||||| ||||||||| |||| |||||    
T  37971073 tctagttttctaatgagagaaactccaacttctctctaaattttctttcttcttcattcat 37971133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 3673226 - 3673277
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctcctt 185  Q
    |||| |||| ||| |||||||| |||||||||||||||||||||||||||||    
T  3673226 tagtattctggtgaaagaaacttcaacttctctctaaactttctttctcctt 3673277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 40211615 - 40211560
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||||  ||||||||||| |||||| |||| |||||||||||||||||    
T  40211615 tagttttctagtgagagaaactccaatttctctttaaaatttctttctccttcgtt 40211560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 20560052 - 20559995
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||| |  |||||| |||||||||||||||||||| ||||| ||||||||||    
T  20560052 agttttctagggagagaaacaccaacttctctctaaactttttttcttcttcgttcat 20559995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 20571614 - 20571557
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||| |  |||||| |||||||||||||||||||| ||||| ||||||||||    
T  20571614 agttttctagggagagaaacaccaacttctctctaaactttttttcttcttcgttcat 20571557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 33214923 - 33214882
Alignment:
Q  151 aaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  33214923 aaacttcaatttctctctaaactttctttctccttcgttcat 33214882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 29937910 - 29937953
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||    
T  29937910 agaaactccaatttctctttaaactttctttctacttcgttcat 29937953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 20553553 - 20553496
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||| |  |||||| ||||||||||| |||||||| ||||| ||||||||||    
T  20553553 agttttctagggagagaaacaccaacttctctttaaactttttttcttcttcgttcat 20553496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 24186953 - 24186921
Alignment:
Q  151 aaactccaacttctctctaaactttctttctcc 183  Q
    ||||||||||||||||||||||||| |||||||    
T  24186953 aaactccaacttctctctaaactttatttctcc 24186921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 33053480 - 33053421
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33053480 ctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 33053421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 605983 - 606041
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  605983 tagttttctagtgggagaaactccaacttttctctaaactttctttctccttcgttcat 606041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 9723690 - 9723632
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9723690 tagttttctagtgaaagaaactccaacttctctctaaactttctttctcgttcgttcat 9723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 23128382 - 23128455
Alignment:
Q  119 tgtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| ||  |||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23128382 tgtgttagccggttctagtattctagtgggagaaactctaacttctctctaaactttctttctccttcgttcat 23128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 68312 - 68253
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  68312 ctagttttttagtaggagaaactccaacttctctctaaactttctttctccttcgttcat 68253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 3913885 - 3913826
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  3913885 ctagttttctagtgagagaaactccaacttctctctaaactttctttctcctttgttcat 3913826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 12170273 - 12170332
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  12170273 ctagttttctagtgagagaaactccaacttctctctagactttctttctccttcgttcat 12170332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 9721818 - 9721763
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  9721818 ttttctagtgagagaaactccaacttctctctaaactttctttctcgttcgttcat 9721763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 32328895 - 32328836
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| |||||||||||| ||||||||||||||||||||||    
T  32328895 ctagttttctagtgagagaaactctaacttctctctatactttctttctccttcgttcat 32328836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 9719703 - 9719645
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||||    
T  9719703 tagttttcttgtgagagaaactccaacttctctctaaactttctttctcgttcgttcat 9719645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 29255749 - 29255695
Alignment:
Q  138 tttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||  ||||| ||||||||||||| ||||| ||||||||||||||||||    
T  29255749 tttctagtgagagaaattccaacttctctccaaactctctttctccttcgttcat 29255695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 29320153 - 29320115
Alignment:
Q  154 ctccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  29320153 ctccaacttctctttaaactttctttctccttcgttcat 29320115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 7515498 - 7515455
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||    
T  7515498 agaagctccaacttctctctaaacttgctttctctttcgttcat 7515455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 14846373 - 14846317
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||   ||||||||||||||||||| ||||||| ||||| |||||||||    
T  14846373 agttttctagtgagtgaaactccaacttctctcttaactttc-ttctctttcgttcat 14846317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 30894415 - 30894470
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||| |||||||||||||    
T  30894415 tctagttttcta-tgagagaaacttcaacttctctctaaacttt-tttctccttcgtt 30894470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 50563 - 50622
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  50563 ctagttttctagtgggagaaactccaacttctttctaaactttctttctccttcgttcat 50622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 72176 - 72117
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  72176 ctagttttctagtgggagaaacttcaacttctctctaaactttctttctccttcgttcat 72117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 13007005 - 13007064
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13007005 ctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 13007064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 38597574 - 38597633
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  38597574 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 38597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 6012448 - 6012391
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6012448 agttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcat 6012391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 26825192 - 26825264
Alignment:
Q  120 gtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||  ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  26825192 gtgttagccgaccctagttttctagtgggagaaactccaatttctctctaaactttctttctccttctttcat 26825264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 11977249 - 11977190
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  11977249 ctagttttctagtgagagaaactctaacttctctctaaactttctttctccttcgttcat 11977190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 25979934 - 25979993
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  25979934 ctagttttctagtgagcgaaactccaacttctctctaaactttctttctccttcgttcat 25979993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 9114051 - 9113978
Alignment:
Q  119 tgtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||  ||||||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||    
T  9114051 tgtgttagccgaccctagttttctagtaggagaaactctaacttctctctaaactttctttctctttcgttcat 9113978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 7036004 - 7036063
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||||||| |||||    
T  7036004 ctagttttctagtgagagaaactcaaacttctctctaaactttctttctccttcattcat 7036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 7929974 - 7930028
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttc 186  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  7929974 tctagttttctagtgagagaaactccaaattctctctaaactttctttctccttc 7930028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 34945207 - 34945257
Alignment:
Q  142 tagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  34945207 tagtgggagaaactccaaattctctctaaactttctttctccttcgttcat 34945257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 38007140 - 38007193
Alignment:
Q  139 ttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||  |||||||| | |||||||||||||||||||||||||||||||||    
T  38007140 ttctagtgagagaaactcaatcttctctctaaactttctttctccttcgttcat 38007193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 24230099 - 24230039
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctct-aaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||| | ||||||||||    
T  24230099 ctagttttctagtgagagaaactccaacttctctctaaaactttctttgttcttcgttcat 24230039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 11074196 - 11074153
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  11074196 agaaactccaacttttctctaaactttctttctccctcgttcat 11074153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 15571262 - 15571321
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||| |||||||||| || ||||||||||||||| |||||    
T  15571262 ctagttttctagtgagagaaactctaacttctctccaagctttctttctccttcattcat 15571321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 26878374 - 26878331
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  26878374 agaaacttcaacttctctctaaactttctttctccttcattcat 26878331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 31392068 - 31392010
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  | ||| || |||||||||||||||||||||||||| ||||||||    
T  31392068 tagttttctagtgagaaaaattctaacttctctctaaactttctttctccatcgttcat 31392010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 4770914 - 4770970
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||  |  |||||||| |||||||||||||||||||||||| |||||||    
T  4770914 ctagttttctaccgagagaaactctaacttctctctaaactttctttcttcttcgtt 4770970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 13421724 - 13421779
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  ||||||| |||||||||| |||||||||||||| |||| |||||    
T  13421724 ttttctagtgagagaaacttcaacttctctttaaactttctttcttcttcattcat 13421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 8096793 - 8096752
Alignment:
Q  148 aagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||| ||||||||||||||||||||| ||||| |||||||    
T  8096793 aagaaattccaacttctctctaaactttttttcttcttcgtt 8096752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 7337975 - 7337916
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  7337975 ctagttttctagtgaaagaaacttcaacttctctctaaactttctttctccttcgttcat 7337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 35484690 - 35484631
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35484690 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 35484631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 34878583 - 34878524
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||    
T  34878583 ctagttttctagtgagagaaactccaacttctctttaaactttctttctctttcgttcat 34878524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 41176978 - 41177021
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41176978 agaaactccaacttctctctaaactttctttctccttcgttcat 41177021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 26535181 - 26535239
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||    
T  26535181 tagttttctagtgagagaaactctaacttctctctaaactttctctctccttcgttcat 26535239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 29738932 - 29738889
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29738932 agaaactccaacatctctctaaactttctttctccttcgttcat 29738889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 35462349 - 35462294
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  35462349 tagttttttagtgggagaaactctaacttatctctaaactttctttctccttcgtt 35462294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 51916964 - 51916904
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcata 193  Q
    |||||||| |||||  ||||||| ||| || ||||||||||||||||||||||||||||||    
T  51916964 ctagttttttagtgagagaaacttcaatttttctctaaactttctttctccttcgttcata 51916904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 10776756 - 10776713
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||| |||||||||||||||||||||||||| |||||    
T  10776756 agaaactccaatttctctctaaactttctttctccttcattcat 10776713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 11462744 - 11462701
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  11462744 agaaacttcaatttctctctaaactttctttctccttcgttcat 11462701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 31983976 - 31984019
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||    
T  31983976 agaaactccaacttctctctaaactttctttcttctttgttcat 31984019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 45415340 - 45415395
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||||  ||||||| |||||||||| |||||||||||||| |||||||    
T  45415340 tagttttctagtgagagaaacttcaacttctctttaaactttctttcttcttcgtt 45415395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 1742062 - 1742120
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  |||||||| ||||||| ||||||||| ||||||| |||||||||    
T  1742062 tagttttctagtgagagaaactcaaacttctttctaaacttcctttctctttcgttcat 1742120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 7837059 - 7837019
Alignment:
Q  152 aactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  7837059 aactccaacttctctctaaaccttctttctctttcgttcat 7837019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 5983632 - 5983675
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||  |||||||||||||||||| ||||||||||||||||    
T  5983632 agaaactttaacttctctctaaactttatttctccttcgttcat 5983675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 14872420 - 14872478
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||||  |||||||||||||||| ||| |||||||||||| |||| |||||    
T  14872420 tagttttttagtgagagaaactccaacttctttctgaactttctttcttcttcattcat 14872478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 21947928 - 21947871
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  ||||||| ||| || |||||||||||||||||| ||||||||||    
T  21947928 tagttttctagtgagagaaacttcaatttttctctaaactttctttct-cttcgttcat 21947871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 27456319 - 27456373
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttc 186  Q
    ||||||||| |||||  | ||||| |||||||| |||||||||||||||||||||    
T  27456319 tctagttttttagtgagaaaaacttcaacttctttctaaactttctttctccttc 27456373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 4413100 - 4413140
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||| ||||| |||||||||||||||||| |||||||    
T  4413100 agaaactctaacttttctctaaactttctttcttcttcgtt 4413140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 15435185 - 15435125
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| || ||  ||||||||||||||||||| |||| |||||||| |||| |||||    
T  15435185 tctagttttttattgagagaaactccaacttctctcaaaaccttctttcttcttcattcat 15435125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 44915424 - 44915484
Alignment:
Q  132 tctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||| ||||||||||  | ||| | |||||||||||||||||||||||||| ||| |||||    
T  44915424 tctaattttctagtgagaaaaatttcaacttctctctaaactttctttctcattcattcat 44915484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 2520575 - 2520633
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  2520575 tagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcat 2520633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 22610981 - 22611038
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttc 190  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22610981 ctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttc 22611038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 13633911 - 13633970
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  13633911 ctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgctcat 13633970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 19853823 - 19853764
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||    
T  19853823 ctagttttctagtgggagaaactccaacttctctctaaactttctttccccttcattcat 19853764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 53810825 - 53810884
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||    
T  53810825 ctagttttctagtgggagaaactccagcttctctctaaactttcttcctccttcgttcat 53810884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 4143066 - 4143007
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  4143066 ctagttttttagtgggagaaactccaacttctctataaactttctttctcctttgttcat 4143007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 26633982 - 26633923
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  26633982 ctagttttttagtgagagaaactccaacttctctctaaactttctttcttcttcgttcat 26633923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 35348103 - 35348162
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||    
T  35348103 ctagttttctagtgaaagaaactccaacttctctttaaactttttttctccttcgctcat 35348162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 10496140 - 10496198
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||    
T  10496140 tagttttctagtgagagaaactccaacttctttctaaactttcttactccttcgttcat 10496198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 21686552 - 21686493
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||  |||||||||||||||||||||||||||| ||||||    
T  21686552 ctagttttctagtgagagaaactttaacttctctctaaactttctttctcctttgttcat 21686493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 22558761 - 22558718
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  22558761 agaaactccaatttctctctaaactttctttctccttcgttcat 22558718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 51024757 - 51024714
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  51024757 agaaactccaacttctctctatactttctttctccttcgttcat 51024714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 32766310 - 32766370
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctct-aaactttctttctccttcgttcat 192  Q
    |||||||||||||||||||||||||||||||| ||| |||  || ||||||||||||||||    
T  32766310 ctagttttctagtggaagaaactccaacttctttctaaaaaattttttctccttcgttcat 32766370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 24099383 - 24099324
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||| ||||||||  || ||||||||||||||||||||| || |||||||    
T  24099383 ctagttttctagtgaaagaaactttaaattctctctaaactttctttcttctacgttcat 24099324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 26091209 - 26091166
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||||||||||||| ||||||||||||| |||||    
T  26091209 agaaactccaacttctctctaaaccttctttctccttcattcat 26091166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 29961225 - 29961182
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  29961225 agaaactccaacttctctctaaactttctttttcctttgttcat 29961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 48257761 - 48257706
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgt 188  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||||||| |||||    
T  48257761 ctagttttctagtgagaaaaactccaacttctctttaaactttctttctcattcgt 48257706  T

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Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 56156849 - 56156806
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  56156849 agaaactccaacttctctctaaactttctttcttattcgttcat 56156806  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 10259188 - 10259150
Alignment:
Q  151 aaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  10259188 aaactccaacttctctctaaacattctttctccttcgtt 10259150  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 9165352 - 9165296
Alignment:
Q  136 gttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| ||| || |||||    
T  9165352 gttttcttgtgagagaaactccaacttctctctaaactttctttttccatcattcat 9165296  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 43510012 - 43510055
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||    
T  43510012 agaaacttcaacttctctttaaactttcattctccttcgttcat 43510055  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 43126694 - 43126735
Alignment:
Q  151 aaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||| |  |||||||||    
T  43126694 aaactccaacttctctctaaactttctttttttttcgttcat 43126735  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 53443941 - 53443982
Alignment:
Q  151 aaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||| ||||||||||||||||||| |||||| |||||||||    
T  53443941 aaacttcaacttctctctaaactttttttctctttcgttcat 53443982  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 34899913 - 34899858
Alignment:
Q  136 gttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttca 191  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34899913 gttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttca 34899858  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 42978389 - 42978446
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||    
T  42978389 agttttctagtgagagaaactctaacttctctctaaactttctttctccttcgttcat 42978446  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 12141604 - 12141561
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12141604 agaaactccaacttctctctaaactttctttctccttcgttcat 12141561  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 40992961 - 40993020
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||| |||||||||||||||||||||||||||  |||| ||||||||||    
T  40992961 ctagttttctagtgggagaaactccaacttctctctaaactttagttcttcttcgttcat 40993020  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 37837769 - 37837711
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||| ||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  37837769 tagttttctaatgagagaaactccaacttctctctaaactttatttctccttcgttcat 37837711  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 45350502 - 45350444
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcata 193  Q
    ||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||    
T  45350502 agttttctagtgagagaaacttcaacttctctctaaactttttttctccttcgttcata 45350444  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 9450445 - 9450390
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  |||||||||||||||| | |||||||||||||||||||||||||    
T  9450445 ttttctagtgagagaaactccaacttctttttaaactttctttctccttcgttcat 9450390  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 30757131 - 30757072
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||| ||||||| ||||||||||||||| |||||||||| |||||||||    
T  30757131 ctagttttttagtgggagaaacttcaacttctctctaaattttctttctctttcgttcat 30757072  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 48061217 - 48061260
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  48061217 agaaactccaacttctctctaaactttctttatccttcgttcat 48061260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 48317123 - 48317065
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  48317123 tagttttcgagtgaaagaaactctaacttctctctaaatttgctttctccttcgttcat 48317065  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 9915924 - 9915979
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||| | || ||||||||||||||||| |||||||||||||||||||||    
T  9915924 ctagttttctagagaaa-aaactccaacttctctccaaactttctttctccttcgtt 9915979  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 9923836 - 9923891
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    |||||||||||| | || ||||||||||||||||| |||||||||||||||||||||    
T  9923836 ctagttttctagagaaa-aaactccaacttctctccaaactttctttctccttcgtt 9923891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 38798571 - 38798628
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  |||||||||||||||| ||| ||||||||||||| |||||||||    
T  38798571 ctagttttctagtg--agaaactccaacttctgtctgaactttctttctcattcgttcat 38798628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 8013777 - 8013718
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||  ||||||| ||||||||||||||||||||||||| ||| ||||||    
T  8013777 ctagttttttagtgagagaaacttcaacttctctctaaactttctttcttctttgttcat 8013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 13797243 - 13797184
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  ||||||| |||||||||| |||| |||||||||| |||||||||    
T  13797243 ctagttttctagtgagagaaacttcaacttctctttaaattttctttctcgttcgttcat 13797184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 39171904 - 39171845
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||  | |||||||||| | |||||||||||||||||| ||||||||||    
T  39171904 ctagttttctagtgagataaactccaacgtatctctaaactttctttcttcttcgttcat 39171845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 19296642 - 19296716
Alignment:
Q  118 ttgtgttagacgagtctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||| |||  |||||||| |||||| ||||||||||||||| ||||||  ||| ||| ||||||||||||    
T  19296642 ttgtgttagccgaccctagttttttagtgggagaaactccaacttccctctaatttttttttgtccttcgttcat 19296716  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 24770055 - 24770093
Alignment:
Q  154 ctccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  24770055 ctccaacttctctctaaactttctttctcattcgttcat 24770093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 193
Target Start/End: Original strand, 47590095 - 47590153
Alignment:
Q  135 agttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcata 193  Q
    |||||| |||||  ||||| ||||||||||||||||| |||||||||| ||||||||||    
T  47590095 agttttttagtgagagaaattccaacttctctctaaattttctttctcattcgttcata 47590153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 19405065 - 19405014
Alignment:
Q  134 tagttttctagtggaagaaactccaacttctctctaaactttctttctcctt 185  Q
    ||||||| |||||  |||||||||||||||||||||||  ||||||||||||    
T  19405065 tagttttttagtgagagaaactccaacttctctctaaatcttctttctcctt 19405014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 39329101 - 39329046
Alignment:
Q  137 ttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||| ||||||    
T  39329101 ttttctagtgagagaaactcaaacttttttctaaactttctttctcctttgttcat 39329046  T

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Target: scaffold0127 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 15269 - 15326
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttc 190  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  15269 ctagttttctagtgagagaaacttcaacttctctctaaactttctttctccttcgttc 15326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 33060 - 33004
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgtt 189  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||    
T  33060 ctagttttctagtgagagaaactctaacttctctctaaactttctttcttcttcgtt 33004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 2268 - 2225
Alignment:
Q  149 agaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  2268 agaaactccaacttctctctaaactttttttctccttcgttcat 2225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 15150 - 15091
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||| |||||||||  ||||||||||| |||||||||||||||||||||||||| |||||    
T  15150 ctagatttctagtgagagaaactccaatttctctctaaactttctttctccttcattcat 15091  T

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Target: scaffold0445 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 1121 - 1180
Alignment:
Q  133 ctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||| |||||   |||||| ||||||||||||||| ||||||||||||||||||||    
T  1121 ctagttttttagtgagtgaaacttcaacttctctctaaattttctttctccttcgttcat 1180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 31565 - 31524
Alignment:
Q  151 aaactccaacttctctctaaactttctttctccttcgttcat 192  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  31565 aaactccaacttttctttaaactttctttctccttcgttcat 31524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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