View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_low_2 (Length: 541)
Name: NF16241_low_2
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 52577712 - 52577188
Alignment:
| Q |
1 |
tatatatagtgcagggaaccacatttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttggagaggt |
100 |
Q |
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| T |
52577712 |
tatatatagtgcagggaaccacatttgtgctgcagaagcaaactgaacccagacaaaagttattaacagcaatttcatcgggggtgggtgttcgagaggt |
52577613 |
T |
|
| Q |
101 |
aagggtgctcnnnnnnnnctctataaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttc |
200 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577612 |
aagggtgctcttttttt--tcaataaacataactggaatatttccaatgtcactatttttcacatccttaattccaacaggcaatagataaactcatttc |
52577515 |
T |
|
| Q |
201 |
cttaaataagaattctggggaagaagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagt |
300 |
Q |
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| T |
52577514 |
cttaaataagaattctggggaagaagatccagaactagaagagggcgaatggcagatgatatggaattcacaggtagattttgaaatacaaacgaagagt |
52577415 |
T |
|
| Q |
301 |
tccaactgataattttgtttttctcatttgaaattaannnnnnnagggagtactgtttgaagatgatttaaatgtaaacaattatcttacaaggttttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52577414 |
tccaactgataattttgtttttctcatttgaaattaatttttttaaggagtactgtttgaagatgatttaaatgtaaacaattatcttactaggttttat |
52577315 |
T |
|
| Q |
401 |
ttttcgtatgtaaacaacttattctctacagactgtgactgatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatct |
500 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577314 |
ttttggtatgtaaacaacttattctctacagactgtgacggatagttggttagagaatgctgccaatggtctgatgggaaagcaggtatcaagttcatct |
52577215 |
T |
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| Q |
501 |
tgtgcatttaatttaattgccacaagt |
527 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
52577214 |
tgtgcatgtaatttaattgccacaagt |
52577188 |
T |
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