View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_low_4 (Length: 510)
Name: NF16241_low_4
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 24779044 - 24779537
Alignment:
| Q |
1 |
gacgtgatatttcaacactaaacccattaaaaagacccttatataggtttcaaactaaaatcaaacagaaactaaagattcaatcaattaactcaatccc |
100 |
Q |
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| T |
24779044 |
gacgtgatatttcaacactaaacccattaaaaagacccttatataggtttcaaactaaaatcaaacagaaactaaagattcaatcaattaactcaatccc |
24779143 |
T |
|
| Q |
101 |
acaaagaattaacattgaacaccaagccctaaacccaaaacagcacgaaattagtattcaataaattaacacaaaaccctaagatttcaaattaacacaa |
200 |
Q |
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| T |
24779144 |
acaaagaattaacattgaataccaagccctaaacccaaaacagcacgaaattagtattcaatcaattaacactaaaccctaagatttcaaattaacccaa |
24779243 |
T |
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| Q |
201 |
ttaaaacccaaaacccaattagcaagaaataatcatacaacaatgaacccaaaaccctaattaacccaattaaaaccctaattaacactaaaactacaga |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779244 |
ttaaaacccaaaacccaattagcacgaaataatcatacaacaatgaacccaaaaccctaattaacccaattaaaaccctaattaacactaaaactacaga |
24779343 |
T |
|
| Q |
301 |
attggtaaagaaaacgaaacttactagggctttcaaacatgaaggtaacagtatcactcccatcatcagccttaatggtaatgatatcatcattaccagc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24779344 |
attggtaaagaaaacgaaacttactagggctttcaaacatgaaggtaacagtatcactcccatcatcagccttaatagtaatgatatcatcattaccagc |
24779443 |
T |
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| Q |
401 |
acacttcaacatcttcgccatattgttcagattcatacccatagaaagattccggtcacagcgataatgctcaaacccttcagaacgaagaaga |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24779444 |
acacttcaacatcttcgccatattgttcagattcatacccatagaaagattccggtcacagcgataatgctcaaacccttcagaacgaagaaga |
24779537 |
T |
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