View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16241_low_5 (Length: 481)
Name: NF16241_low_5
Description: NF16241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16241_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 52578137 - 52577680
Alignment:
| Q |
18 |
gtttgatctatatgtctgaccctatcttgtgggacaaagacttccttgatgctctcgttcttgttcttatactcatgtccttcaatttaaataggcagca |
117 |
Q |
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| T |
52578137 |
gtttgatctatatgtccgaccctatcttgtgggacaaagacttccttgatgctctcgttcttgttcttatactcatgtccttcaatttaaataggcagca |
52578038 |
T |
|
| Q |
118 |
gcatccattggagatggaaaaagaatcctttttaggtttgacagagctgccttttctttcaaatttcttccatttaaagttccatatccagttccattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578037 |
gcatccattggagatggaaaaagaatcctttttaggtttgacagagctgccttttctttcaaatttcttccatttaaagttccatatccagttccattta |
52577938 |
T |
|
| Q |
218 |
agcttctcggagatgaagcaaagggttggttagacaccacatacttatcgcattcaggaaaccttcgcatctcaagagggaataaggtgattaggcattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577937 |
agcttctcggagatgaagcaaagggttggttagacaccacatacttatcgcattcaggaaaccttcgcatctcaagagggaataaggtgattaggcattt |
52577838 |
T |
|
| Q |
318 |
ccaatataaacatcatcttaatatatagtcttttgttcctcccctcaattaaaatgcttgttcgtctagcacatcaaatcaaagcatttttataaaaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52577837 |
ccaatataaacatcatcttaatatatagtcttttgttcctcccctcaattaaaatgctagttcgtctagcacatcaaatcaaagcatttttataaaaaca |
52577738 |
T |
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| Q |
418 |
atgtttccaagacttaacagcaacatatatatagtgcagggaaccacatctgtgctgc |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52577737 |
atgtttccaagacttaacagcaacatatatatagtgcagggaaccacatttgtgctgc |
52577680 |
T |
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