View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16242_low_2 (Length: 359)
Name: NF16242_low_2
Description: NF16242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16242_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 24858827 - 24858943
Alignment:
| Q |
182 |
tgatggtggttgtgagtgcaggtgtaactgcaaatgagacattatcgacgctgcttctctgtttcttctgtgtttgaaagaaagtctcaagaaaagagta |
281 |
Q |
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| T |
24858827 |
tgatggtggttgtgagtgtaggtgtaactgcaaatgagacattatcgacgctgcttctctgtttcttctgtgttt----gaaagtctcaagaaatgagta |
24858922 |
T |
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| Q |
282 |
aacaataagatgtaataatagttt |
305 |
Q |
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| T |
24858923 |
aac---aagatgtaataatagttt |
24858943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 24858665 - 24858742
Alignment:
| Q |
20 |
gggtgtagtgggaggaggaggggggtttgaaggggaagggttgaagacgtcagagtggcggcatctgatagtgaaggg |
97 |
Q |
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| T |
24858665 |
gggtgtagtggcaggaggaggggggtttgaaggggaagggttgaaaacgtcagagtggcggcatctgatagtgaaggg |
24858742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 24860327 - 24860378
Alignment:
| Q |
297 |
taatagtttaacacaatgtgtcaaatattttgttcaagtgagtttgagaatt |
348 |
Q |
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| T |
24860327 |
taatagtttaacacaatgtgtcaaatattttgttcaagtgagtttgagaatt |
24860378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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