View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16242_low_3 (Length: 310)
Name: NF16242_low_3
Description: NF16242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16242_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 2929314 - 2929038
Alignment:
| Q |
20 |
aaggtcgctaaagtccttagtatatatctccatataccattctaataaataagtcccatatttagtttattaattttatggcattgtcttcaattcatat |
119 |
Q |
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| T |
2929314 |
aaggtcgctaaagtccttagtatatatctccatataccattctaataa----gtcccatatttagtttattaattttatggcattgtcttcaattcatat |
2929219 |
T |
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| Q |
120 |
atgaaatcaaagtccgtagtcactaattttttcactttaaaagtcatatgctacaaagttttgatttcatataaagactgacgac-aaaacttctacatg |
218 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2929218 |
atgaaatcaaagtccttagtcactaattttttcactttaaaagtcatatgctacaaagttttgatttcatataaagactgacgacaaaaacttctacatg |
2929119 |
T |
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| Q |
219 |
atatatcaaagtgcagccaatcttcggggcacataaagcaatcatgatgttgatcaccaatccaatattaaccataccttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929118 |
atatatcaaagtgcagccaatcttcggggcacataaagcaatcatgatgttgatcaccaatccaatattaaccataccttt |
2929038 |
T |
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