View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16242_low_6 (Length: 230)
Name: NF16242_low_6
Description: NF16242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16242_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 32326109 - 32325909
Alignment:
| Q |
13 |
attattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatct |
112 |
Q |
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| T |
32326109 |
attattctttgagattatttttctctgacttaattgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctaatct |
32326010 |
T |
|
| Q |
113 |
tcctcctctcattggcctttgtaagtcattcttatcattacattacatgcattcttaattacttcggnnnnnnnncttctgcgcgcaatggcagagatta |
212 |
Q |
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| T |
32326009 |
tcctcctctcattggcctttgtaagtcattcttattattacattacattcattcttaattacttcggttttttttcttcttcgcgcaattgcagagatta |
32325910 |
T |
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| Q |
213 |
t |
213 |
Q |
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| |
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| T |
32325909 |
t |
32325909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 38221283 - 38221210
Alignment:
| Q |
45 |
attgctggtctcaccattgctagtcttgccattcctcaaggcattagttatgccaaacttgctgatcttcctcc |
118 |
Q |
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|||||||| |||||||||||||| | || ||||||||||||||||||||||| || |||||| | |||||||| |
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| T |
38221283 |
attgctgggatcaccattgctagtttggctattcctcaaggcattagttatgcaaagcttgctaaccttcctcc |
38221210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 106
Target Start/End: Original strand, 31744641 - 31744672
Alignment:
| Q |
75 |
attcctcaaggcattagttatgccaaacttgc |
106 |
Q |
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| T |
31744641 |
attcctcaaggcattagttatgccaaacttgc |
31744672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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