View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16243_high_13 (Length: 205)
Name: NF16243_high_13
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 30854082 - 30854222
Alignment:
| Q |
13 |
gaaatgaagaataatgaggagttacatgatatcataatccaaaggnnnnnnnn-catacaaaactgcataaaaagtatttgactgcgattttttataata |
111 |
Q |
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| T |
30854082 |
gaaataaagaataatgaggagttacatgatatcataatccaaaggaaaaaaaaacatacaaaactgcataaaatgtatttgactgcgattttttataata |
30854181 |
T |
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| Q |
112 |
tcaaggatcacaatgtagctgaactcaacatttgactgaga |
152 |
Q |
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| T |
30854182 |
tgaaggatcacaatgtagctgaactcaacatttgactgaga |
30854222 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 15064511 - 15064467
Alignment:
| Q |
103 |
tttataatatcaaggatcacaatgtagctgaactcaacatttgac |
147 |
Q |
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| T |
15064511 |
tttataatatcaaggatcacaatgttggtgaacacaacatttgac |
15064467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 15076361 - 15076292
Alignment:
| Q |
78 |
cataaaaagtatttgactgcgattttttataatatcaaggatcacaatgtagctgaactcaacatttgact |
148 |
Q |
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| T |
15076361 |
catacaaaatatttaagtgcgatttttcataatattaaggatcacaatgtagctcaacacaa-atttgact |
15076292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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