View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16243_high_2 (Length: 586)
Name: NF16243_high_2
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 302 - 570
Target Start/End: Original strand, 48904565 - 48904833
Alignment:
| Q |
302 |
tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904565 |
tattgggagaaactcatgtaaatctcagattttgaaatgattgtaagtggtgaaaatcacatgaacttcactcaataaattcacccaataaaagagagtg |
48904664 |
T |
|
| Q |
402 |
agttttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccaatgactaactacaccaccacaaac |
501 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48904665 |
agtgttagagttaatgttagaaaataaagtgttatgagcatttctctttaatacataacacaatcatgtggaaccgatgactaactacaccaccacaaac |
48904764 |
T |
|
| Q |
502 |
acaccaatggaattttatgagctattttttctctccacattgcttagttcaaattttgtaatgtgaaag |
570 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904765 |
acaccaatggaactttatgagctattttttccctccacattgcttagttcaaattttgtaatgtgaaag |
48904833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 48904261 - 48904531
Alignment:
| Q |
1 |
aggaatcaaacaagacatgattcttgcttagaacaaaatgtttacttatattaactct---aacatttttgtttgtgtcatcttcttaagattgtagatt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904261 |
aggaatcaaacaagacatgattcttgcttagaacaaaatgtttacttatattaactcttttaacatttttgtttgtgtcatcttcttaagattgtagatt |
48904360 |
T |
|
| Q |
98 |
gtcccctgacataaacaccatttagctccttaaaaatcttagcaaggaaactcaatggaataaaatctggtgatgggaaaaaaggtttaccacaaataaa |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48904361 |
gtcccctgacataaacaccatttagctccttaaaaatcttagcaagaaaactcaatggaataaaatctggtgatgggaaaaaaggtttaccacaaataaa |
48904460 |
T |
|
| Q |
198 |
ttggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaagagtgttatgacca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48904461 |
ttggaaataaatcagcagcaccaacggtaatcagaaatcccttatttaatacataaatagtgttatgacca |
48904531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 566
Target Start/End: Complemental strand, 10769669 - 10769628
Alignment:
| Q |
524 |
tattttttctctccacattgcttagttcaaattttgtaatgtg |
566 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
10769669 |
tattttttct-tccacattgcttagttcaaatcttgtaatgtg |
10769628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University