View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16243_high_9 (Length: 238)
Name: NF16243_high_9
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_high_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 9259189 - 9258969
Alignment:
| Q |
18 |
cacttgtttcatccttcactctgtaacggtcgccgattacttatctttcctctcactcatcactatctccgctgacggcgtcagtgactttcataaatgt |
117 |
Q |
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| T |
9259189 |
cacttgtttcatccttcactctgtaacggtcgccgattacttatctttcctctcactcatcactatctccgctgacggcgtcagtgaatttcataaatgt |
9259090 |
T |
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| Q |
118 |
caccaaccaccaaaattctcacggccaaccaccgcaaaaactactccccaaaactcacatcctcgtcttcgaagatgaaaaaggtcacgaagacgaaatc |
217 |
Q |
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| T |
9259089 |
caccaaccaccaaaattctcacggccaaccaccgcaaaaaccactccccaaaactcacatcctcgtcttcgaagatgaaaaagatcacgaaaacgaaatc |
9258990 |
T |
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| Q |
218 |
atcgaaattacaattcttcgt |
238 |
Q |
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| T |
9258989 |
atcgaaattacaattcttcgt |
9258969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 9269090 - 9268964
Alignment:
| Q |
112 |
aaatgtcaccaaccaccaaaattctcacggccaaccaccgcaaaaactactccccaaaactcacatcctcgtcttcgaagatgaaaaaggtcacgaagac |
211 |
Q |
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||||||||| |||||||||| |||||||||||||||| |||||||| ||| | |||||||||||| ||||||||||||||||||||||||| | | || |
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| T |
9269090 |
aaatgtcacagaccaccaaaactctcacggccaaccacggcaaaaaccacttctcaaaactcacatgctcgtcttcgaagatgaaaaaggtctcagaaac |
9268991 |
T |
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| Q |
212 |
gaaatcatcgaaattacaattcttcgt |
238 |
Q |
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| T |
9268990 |
gaaatcatcgaaattacaattcttcgt |
9268964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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