View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16243_low_1 (Length: 628)
Name: NF16243_low_1
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 18 - 611
Target Start/End: Original strand, 5984597 - 5985183
Alignment:
| Q |
18 |
agtcagaaatgttaacaacatgatgaataataataataatacattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctctttaattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
5984597 |
agtcagaaatgttaacaacatgatgaataataataata---cattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctcttta----t |
5984689 |
T |
|
| Q |
118 |
ttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984690 |
ttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgtgtacttcccttactctatgctcttcggtgtacttactgac |
5984789 |
T |
|
| Q |
218 |
aagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcactcaat |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
5984790 |
aagcttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttctgcgctcaat |
5984889 |
T |
|
| Q |
318 |
gatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcctcat |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984890 |
gatgctgttcgtttgagctatgctgcgcatcttgtccttgtatttcctgtaattttctatgcattgagggtcaacttagatggtctaatattttcctcat |
5984989 |
T |
|
| Q |
418 |
caagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaacatttg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5984990 |
caagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaacatttg |
5985089 |
T |
|
| Q |
518 |
ggttattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcacaaaat |
611 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5985090 |
ggttattttccagttcactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcacaaaat |
5985183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 121 - 606
Target Start/End: Original strand, 5968684 - 5969169
Alignment:
| Q |
121 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaag |
220 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5968684 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacttcccttactctatgctcttcggtgtacttactgacaag |
5968783 |
T |
|
| Q |
221 |
cttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcactcaatgat |
320 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
5968784 |
cttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttttgcgctcaatgat |
5968883 |
T |
|
| Q |
321 |
gctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcctcatcaa |
420 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
5968884 |
gctgttcgtttgagctatgctgcgcatcttgtgcttgtatttcctgtaattttctatgcgttgaggctcaacgtagatggtctgatattttcctcatcaa |
5968983 |
T |
|
| Q |
421 |
gaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaacatttgggt |
520 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5968984 |
gaaggcctttggttgttgataacttaagattttcatcagttactattgcctttgttcttattatcttcctcggagcaaatttcataccgaacatttgggt |
5969083 |
T |
|
| Q |
521 |
tattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcac |
606 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| ||| |||| | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5969084 |
tattttccagttcactggagcaacaggtgctgtctgtatagcattcatatttccagctgcaatcgctctgaggtgagtttggtcac |
5969169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 114 - 606
Target Start/End: Original strand, 5963544 - 5964036
Alignment:
| Q |
114 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttac |
213 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| || || ||| |
|
|
| T |
5963544 |
ttatttgcagttcataacattgataatgaactggaggattcctcacggatgcgtggggttgtgcgtacttcccttactctatgctcttcagtatatgtac |
5963643 |
T |
|
| Q |
214 |
tgacaagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcact |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||| || |
|
|
| T |
5963644 |
tgacaagcttctttgggttccttctatttggtgaaggaactcttgatgatgtgcttgccaattttgatactgattttggaattccttttggttctgctct |
5963743 |
T |
|
| Q |
314 |
caatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcc |
413 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
5963744 |
taatgatgctgttcgttttagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacatagatggtctcatattttcc |
5963843 |
T |
|
| Q |
414 |
tcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaaca |
513 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| | || |
|
|
| T |
5963844 |
tcttcgagaaggcctttggttgttgataacttcagatttgcatcaattactattgcccttgttggcactatcttcctcggggcaaatttcatacctagca |
5963943 |
T |
|
| Q |
514 |
tttgggttattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcac |
606 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||| |||| | |||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
5963944 |
tttgggttattttccagttctctggagcaacaggtgctgtttgtatagcattcatatttccagctgcaatcactttgaggtgagtctggtcac |
5964036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 121 - 606
Target Start/End: Complemental strand, 8715463 - 8714978
Alignment:
| Q |
121 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgacaag |
220 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8715463 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacatcccttactctatgctcttcggtgtacttactgacaag |
8715364 |
T |
|
| Q |
221 |
cttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcactcaatgat |
320 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
8715363 |
cttctttgggttccttctatttggtgaaggagttcttgatgatgttcttgccaattttgatactgatcttggaattcccttcggttgtgcgctcaatgat |
8715264 |
T |
|
| Q |
321 |
gctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcctcatcaa |
420 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
8715263 |
gctgttcgtttgagctatgctgcgcatcttgtgcttgtatttcctgtaattttctaagcgttgaggctcaacgtagatggtctgatattttcctcatcaa |
8715164 |
T |
|
| Q |
421 |
gaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaacatttgggt |
520 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8715163 |
gaaggcctttggttgttgataacttaagattttcatcagttactattgccattgttctaattatcttcctcggagcaaatttcataccgaacatttgggt |
8715064 |
T |
|
| Q |
521 |
tattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcac |
606 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| ||| |||| | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8715063 |
tattttccagttcactggagcaacaggtgctgtctgtatagcattcatatttccagctgcaatcgctctgaggtgagtttggtcac |
8714978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 114 - 606
Target Start/End: Original strand, 5935147 - 5935639
Alignment:
| Q |
114 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttac |
213 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |||||| ||||| || ||||||||| | |||||||||||||||||||| || ||||||| |
|
|
| T |
5935147 |
ttatttgcagttcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttcagtttacttac |
5935246 |
T |
|
| Q |
214 |
tgacaagcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcact |
313 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | |||| |||||| ||||||||||||||| || |||| |||||||| ||||||||||| || |
|
|
| T |
5935247 |
tgacaagcttctttgggttccttctatttggtgacgatactcttcctgacgttcttgccaattttgatactaatctcggaattccttttggttctgcgct |
5935346 |
T |
|
| Q |
314 |
caatgatgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcc |
413 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || |
|
|
| T |
5935347 |
caatgatgctgttcgttttagctatgctgcgcatctcgtacttgtatttcctgtagttttctatgcattgagggtcaacatagatggtctgatatttacc |
5935446 |
T |
|
| Q |
414 |
tcatcaagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaaca |
513 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||| |||||||||||| | |||||||| ||||| || | || |
|
|
| T |
5935447 |
tcatcaagaaggcctttggttgttgataacttacgatttgcatcaattactattgcgcttgtcggcattatcttcatgggagcaaacttcatccctagca |
5935546 |
T |
|
| Q |
514 |
tttgggttattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactctgaggtgagtttggtcac |
606 |
Q |
| |
|
|||||| | |||||||||| ||||||||||| | |||||||||| |||||||| | |||||||||||||||||||||| || |||||| |||| |
|
|
| T |
5935547 |
tttgggatcttttccagttcactggagcaactgctgctgtttgtttaggattcatatttccagctgcaatcactctgaagtaagtttgatcac |
5935639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 119 - 589
Target Start/End: Complemental strand, 5628331 - 5627864
Alignment:
| Q |
119 |
tgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtgtacttactgaca |
218 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||| |||| || ||||| ||||| |||| ||||||||| || ||||| ||| ||| | |
|
|
| T |
5628331 |
tgcagttcacagcatagataatgaactcgaggacaactcacagatgcaaggcgttgtacgtacagccctcggtctatgctcatccgtgtatttaatgata |
5628232 |
T |
|
| Q |
219 |
agcttctttggattccttctatttggtgaaggagttcttgatgacgtgcttgccaattttgatgctgatcttggaattccctttggttctgcactcaatg |
318 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||| | |
|
|
| T |
5628231 |
agcttctttgggttcctcctatttggtgaaggaactcttgatgacgtacttgccaatttcgatgctgatcttggaattccttttggttctttgctcaacg |
5628132 |
T |
|
| Q |
319 |
atgctgttcgtttgagctatgttgcgcatcttgtgcttgtatttcctgtagttttctatgcattgagggtcaacttagatggtctaatattttcctcatc |
418 |
Q |
| |
|
||||||||||| | ||||||| ||| || || ||||||||||||| || || || | ||||| | |||| |||||||||| | || | ||| |
|
|
| T |
5628131 |
atgctgttcgtattagctatgctgcacacctcatgcttgtatttccagttgtgtttttcccattgcgactcaatatagatggtcttctcttccctaaatc |
5628032 |
T |
|
| Q |
419 |
aagaagacctttggttgttgataacttcagatttgcatcaattactatttcccttgttggcattatcttcctcggagcaaatttcataccgaacatttgg |
518 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| ||| |||||||| |||| |||||||| | ||||||||||||||||| | ||||||| |
|
|
| T |
5628031 |
---aagacctttggttctggataacttcagatttgcatcaatgactgtttcccttattggtgttatcttcttgggagcaaatttcatacctagcatttgg |
5627935 |
T |
|
| Q |
519 |
gttattttccagttgactggagcaacaggtgctgtttgtgtaggattcgtttttccagctgcaatcactct |
589 |
Q |
| |
|
| | ||||||||| ||||||||||| | || || ||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
5627934 |
gatgctttccagttcactggagcaaccgccgcggtctgtataggattcatctttccagctgccatcactct |
5627864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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