View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16243_low_12 (Length: 223)
Name: NF16243_low_12
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5984597 - 5984778
Alignment:
| Q |
18 |
agtcagaaatgttaacaacatgatgaataataataataatacattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctctttaattat |
117 |
Q |
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| T |
5984597 |
agtcagaaatgttaacaacatgatgaataataataata---cattttgtagtttttgcttggttgcttgatggggttgtatttgtgtgctcttta----t |
5984689 |
T |
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| Q |
118 |
ttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtg |
206 |
Q |
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| T |
5984690 |
ttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgtgtacttcccttactctatgctcttcggtg |
5984778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 5963544 - 5963632
Alignment:
| Q |
114 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttc |
202 |
Q |
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| T |
5963544 |
ttatttgcagttcataacattgataatgaactggaggattcctcacggatgcgtggggttgtgcgtacttcccttactctatgctcttc |
5963632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 5968684 - 5968769
Alignment:
| Q |
121 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtg |
206 |
Q |
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| T |
5968684 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacttcccttactctatgctcttcggtg |
5968769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 8715463 - 8715378
Alignment:
| Q |
121 |
cagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttcggtg |
206 |
Q |
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| T |
8715463 |
cagttcaaagcatagagaatgaactggaggattcctcacggatacgtggggttgtgcgtacatcccttactctatgctcttcggtg |
8715378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 5935147 - 5935235
Alignment:
| Q |
114 |
ttatttgcagttcatagcatagataatgaactggaggattcctcacggatgagcggggttgtgcgtacgtcccttactctatgctcttc |
202 |
Q |
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| T |
5935147 |
ttatttgcagttcacaacatagataatgaactggaggactcctcatggatgcatggcgttgtgcgtgcttcccttactctatgctcttc |
5935235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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