View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16243_low_3 (Length: 560)
Name: NF16243_low_3
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 10 - 544
Target Start/End: Original strand, 45219150 - 45219684
Alignment:
| Q |
10 |
gcataggcaacagtaaaattctaggacgttgattccttgcaataaaatctcagtcattgatttaatatcaatcgctcagattatacaatcagtaaattaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
45219150 |
gcataggcaacagtaaaattctaggaccttgattccctgcaataaaatctcagccattgatttaatatcaatcactcagattatacaatcagtaaaataa |
45219249 |
T |
|
| Q |
110 |
ttttaaacaatctcgactattgatttaaatcgtacagtcgagatctttaactgcatgaaacagtgacagcagccaaacatatttgctaatcatgtagtaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45219250 |
ttttaaacaatctcgactattgatttaaatcgtacagtcgagatctttaactgcatgaaacagtgactgcagccaaacatatttgctaatcatgtagtaa |
45219349 |
T |
|
| Q |
210 |
tacaagtttagatcaaaataaggtcccccatttcctcactttaactttcactttccctcaaccaatacaaaatgtaggacacaagcgactgaggcctaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219350 |
tacaagtttagatcaaaataaggtcccccatttcctcactttaactttcactttccctcaaccaatacaaaatgtaggacacaagcgactgaggcctaag |
45219449 |
T |
|
| Q |
310 |
gacttgcattgaaaatcacatactttggtacctagaaagaaattttctctgacattgatggacaagtaataactttttgaaattgattattcctcctaga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219450 |
gacttgcattgaaaatcacatactttggtacctagaaataaattttctctgacattgatggacaagtaataactttttgaaattgattattcctcctaga |
45219549 |
T |
|
| Q |
410 |
tcatgttcaagtttggcttgggttcaaaatccttgacnnnnnnnggataaggacaaggaaaggatatgtttgtgtctgccctcagataggaaaaagcatt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219550 |
tcatgttcaagtttggcttgggttcaaaatccttgacaaaaaaaggataaggacaaggaaaggatatgtttgtgtctgccctcagataggaaaaagcatt |
45219649 |
T |
|
| Q |
510 |
aaggtaagggtatcacgcagttagaaatacaacat |
544 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
45219650 |
aaggtaagggtatcacccagttagaaatacaacat |
45219684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 30286809 - 30286760
Alignment:
| Q |
85 |
tcagattatacaatcagtaaattaattttaaacaatctcgactattgatt |
134 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| || ||| ||||||| |
|
|
| T |
30286809 |
tcagattacacaatcagtaaattagttttaaacaaccttgaccattgatt |
30286760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 5985338 - 5985366
Alignment:
| Q |
108 |
aattttaaacaatctcgactattgattta |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5985338 |
aattttaaacaatctcgactattgattta |
5985366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University