View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16243_low_4 (Length: 409)
Name: NF16243_low_4
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 29598028 - 29597649
Alignment:
| Q |
20 |
caaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttt |
119 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
29598028 |
caaccttgcagaccaggcaagctaactttttccttcgggtatgatatttcaactagaacttataatgctgtggttttgtgttctagggaggtgaaagttt |
29597929 |
T |
|
| Q |
120 |
tcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcattt |
219 |
Q |
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|| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||| |
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| T |
29597928 |
tccgtttcggtgataatatttggagaaaaattgtaagttttactccttataaccttcttgatacccttggctgtagttatgtgaaccaaggagtgcattt |
29597829 |
T |
|
| Q |
220 |
gagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaa |
319 |
Q |
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|||||||||| ||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29597828 |
gagtggcactgttaactggatatccatttatctgaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaggaaa |
29597729 |
T |
|
| Q |
320 |
tcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatggtccgcctttg |
399 |
Q |
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| | | ||||||||||| || ||||||| |||||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |
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| T |
29597728 |
ttgttgccccctcctggtgctgttaatttagtgtcacgatatactgaaccaactattgctgttttgctggaccgcctttg |
29597649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 29647268 - 29647639
Alignment:
| Q |
20 |
caaccttgcaggccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttt |
119 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29647268 |
caaccttgcagaccaggcaagctcactttttccttcgggtatgataattcaactagaacttataatgccgtggttttgtgttctagtgaggtgaaagttt |
29647367 |
T |
|
| Q |
120 |
tcggattcaatgataatatttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgca |
216 |
Q |
| |
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|| | ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| ||||| ||||||| ||||||||| | |
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| T |
29647368 |
tccgtttcggtgataatatttggagaaaaattgcaag-tttactccttataaccttgttgatacccttggccatagtgttgtgaaccaacaaggagtgta |
29647466 |
T |
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| Q |
217 |
tttgagtggcactattagctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
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||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| ||| |||||||||||| |
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| T |
29647467 |
tttgagtggcactgttaattggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatattggtaccgagacatacaag |
29647566 |
T |
|
| Q |
317 |
aaatcgctaccccctcctggagcagttaattcagtgtcaccatatattgaaccaattattgctgttttgatgg |
389 |
Q |
| |
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||| |||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |||||||| |
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| T |
29647567 |
aaactgctaccccctcctggagcagttaatttagtgccaccatatattgaaccaactattgctactttgatgg |
29647639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 379
Target Start/End: Original strand, 29641967 - 29642312
Alignment:
| Q |
37 |
caagctcactttttccttcgggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataat |
136 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
29641967 |
caagctcagtttttcattcgggtatgataattcaactagaacttataatgcggtggttttgtgtactagtgaggtgaaagttttccatttcggtgataat |
29642066 |
T |
|
| Q |
137 |
atttggagaaaaattgcaagttttactccttataaccttgttgacactcttggctatagttatgtgaac---caaggagtgcatttgagtggcactatta |
233 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| || |||||| || | ||||||| ||||||||| |||||||||||||| ||| |
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| T |
29642067 |
atttggagaaaaattgcaaattttactccttataaccttgttgatacccttggccatgatggtgtgaaccaacaaggagtgtatttgagtggcactgtta |
29642166 |
T |
|
| Q |
234 |
gctggatttccttttatccaaaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaagaaatcgctaccccctcc |
333 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
29642167 |
attggatttccatttatccggaggatgttactcttgataaatttgcgattatctcgcttgatcttggtaccgagacatacaagaaactgctaccccctcc |
29642266 |
T |
|
| Q |
334 |
tggagcagttaattcagtgtcaccatatattgaaccaattattgct |
379 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||| ||||||| |
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| T |
29642267 |
tggagcagttaatttagtgccaccatatactgaaccaactattgct |
29642312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 19326431 - 19326262
Alignment:
| Q |
56 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
155 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | ||| ||||||||||||||||||||||| | || | |||||||||||||||||||||| ||| |
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| T |
19326431 |
gggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaaaatttcaa |
19326332 |
T |
|
| Q |
156 |
gttttactccttataaccttgttgacactcttggctatagttatgtgaaccaaggagtgcatttgagtggcac |
228 |
Q |
| |
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| ||| |||||| | ||| || || |||||||||| |||| | |||| |||||||| ||||||||||||| |
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| T |
19326331 |
gctttcctccttttgaccatgctgttactcttggctttagtaa---gaacgaaggagtgtatttgagtggcac |
19326262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 19344811 - 19344749
Alignment:
| Q |
254 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
19344811 |
aaggatattactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19344749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 19374608 - 19374663
Alignment:
| Q |
261 |
ttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||| |
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|
| T |
19374608 |
ttactgttgggaaatttgtgattatctcccttgatcttggtaccgagacatacaag |
19374663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 19326221 - 19326159
Alignment:
| Q |
254 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
| |
|
|||||| |||| || ||| ||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
19326221 |
aaggatattaccgtcgagcaatttatgattatctcccttgatcttggtactgagacatacaag |
19326159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 26256620 - 26256671
Alignment:
| Q |
265 |
tgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | || |||||||||||| |
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|
| T |
26256620 |
tgttgagcaatttgtgattatttcgcttgatctttcaacggagacatacaag |
26256671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 24254881 - 24254770
Alignment:
| Q |
56 |
gggtatgataattcaactagaacttataatgttgtggttttgtgttctagtgaggtgaaagttttcggattcaatgataatatttggagaaaaattgcaa |
155 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||| | | |||| |||| | ||||||||||| | || || ||||||||||||||||||||| ||| |
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| T |
24254881 |
gggtatgataattcaactggaacttataaggtggtgttcatatgttatagtaaactgaaagttttcagtttgaaggataatatttggagaaaaatttcaa |
24254782 |
T |
|
| Q |
156 |
gttttactcctt |
167 |
Q |
| |
|
| ||| |||||| |
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|
| T |
24254781 |
ggtttcctcctt |
24254770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 24254662 - 24254600
Alignment:
| Q |
254 |
aaggatgttactgttgagaaatttgtgattatctcgcttgatcttgctactgagacatacaag |
316 |
Q |
| |
|
|||||| |||| |||||| |||| |||||||||| |||||||||| |||||||||||||||| |
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|
| T |
24254662 |
aaggatattaccgttgagcaattcatgattatctcccttgatcttggtactgagacatacaag |
24254600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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