View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16243_low_5 (Length: 372)
Name: NF16243_low_5
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 42975324 - 42975665
Alignment:
| Q |
18 |
tcttgcaaatagatcagctgtttaccttgaaaaagacattgttagtttgtttgttacaaagtcaactatggatgaaatttactcttagacgcgttgtcga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975324 |
tcttgcaaatagatcagctgtttaccttgaaaaagacattgttagtttgtttgttacaaagtcaactatggatgaaatttactcttagacgcgttgtcga |
42975423 |
T |
|
| Q |
118 |
gctcaactttcctaaatagnnnnnnnnn--aaagaactttcttattatcttagtgaagttttaatttttgatttcatataagaaaaaattcttctgaaat |
215 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42975424 |
gctcaactttcctaaatagtttttttttttaaagaactctcttattatcttagtgaagttttaattttcgatttaatataagaaaaaattcttctgaaat |
42975523 |
T |
|
| Q |
216 |
tttccgcgtatagtttttcccccagttatcggttaaatttaatatattagtttttagatgtagtttattcattcttctttatatttggccaattggcccc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975524 |
tttccgcgtatagtttttcccccagttatcggttaaacttaatatattagtttttagatgtagtttattcattcttctttatatttggccaattggcccc |
42975623 |
T |
|
| Q |
316 |
ctcgtaaaatttatgttagctccgtcattgtctgtgcttcat |
357 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42975624 |
ctcgtaaaatttatgttagctccatcattgtctgtgcttcat |
42975665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University