View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16243_low_7 (Length: 253)
Name: NF16243_low_7
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_7 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 9258371 - 9258610
Alignment:
| Q |
14 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9258371 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcatacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
9258470 |
T |
|
| Q |
114 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9258471 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcataccgtgacatataaa |
9258570 |
T |
|
| Q |
214 |
gagctaccaacagtgaaggaatttccataaacatgaaaac |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9258571 |
gagctaccaacagtgaaggaatttccataaacatgaaaac |
9258610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 9268379 - 9268606
Alignment:
| Q |
14 |
agatgaaaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaa |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9268379 |
agatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaactccaataacacttcaaggtaa |
9268478 |
T |
|
| Q |
114 |
acaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgcatttgcatactgtgacatataaa |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||| |||| ||||| || | ||||||| ||||| |
|
|
| T |
9268479 |
acaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgcccatttgc------------ataaa |
9268566 |
T |
|
| Q |
214 |
gagctaccaacagtgaaggaatttccataaacatgaaaac |
253 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9268567 |
gatctaccaacagtgaaggaatttccataaacatggaaac |
9268606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 9250306 - 9250436
Alignment:
| Q |
20 |
aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc |
119 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||||| ||| ||||||||| | ||| |||||||||||||||||||||||| ||||||| |||||| ||| | |
|
|
| T |
9250306 |
aaaaccatcccgacaacaaacatacaaaggatgatcacacttacaccctacccctctaagcaattcacaaaactccaacaacacttctaggtaagcactc |
9250405 |
T |
|
| Q |
120 |
tgcaactttttgtccttcaaatctaaacaaa |
150 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |
|
|
| T |
9250406 |
tgcaacgttttgcacttcaaatctaaacaaa |
9250436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 9237782 - 9237914
Alignment:
| Q |
20 |
aaaactatcccggcaaaaaacatacagaggatcatcgtacttacaccgtgcccttctaagcaattcacaaaactccaatgacacttcaaggtaaacaccc |
119 |
Q |
| |
|
||||| |||||| ||| ||||||||| ||| ||||| || || | | | ||| |||||||||||||||||| ||||| | | ||||||||| | |||| |
|
|
| T |
9237782 |
aaaaccatcccgacaagaaacatacaaaggctcatcacacgtaaaacctacccctctaagcaattcacaaaaatccaacaaaatttcaaggtagaaaccc |
9237881 |
T |
|
| Q |
120 |
tgcaactttttgtccttcaaatctaaacaaatt |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
9237882 |
tgcaactttttgcacttcaaatctaaacaaatt |
9237914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 9237969 - 9238017
Alignment:
| Q |
204 |
gacatataaagagctaccaacagtgaaggaatttccataaacatgaaaa |
252 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| ||| ||| |||||| |
|
|
| T |
9237969 |
gacatataaagtgctaccaacagagaaggaattttcattaacttgaaaa |
9238017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University