View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16243_low_9 (Length: 248)
Name: NF16243_low_9
Description: NF16243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16243_low_9 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 44800072 - 44799840
Alignment:
| Q |
18 |
attgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggc |
117 |
Q |
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| T |
44800072 |
attgagattgataacaaggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggc |
44799973 |
T |
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| Q |
118 |
gtcataccaagtatcttccctttgtcagtaaaatgtgaatgt--atacaagtaattgtgaaggaagcaaacctgataggnnnnnnnncaagacctttgga |
215 |
Q |
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| T |
44799972 |
gtcataccaagtatcttccctttgtcagtaaaatgtgaatgtgcatacaagtaattgtgaaggaagcaaacctgataggttttttttcaagacctttgga |
44799873 |
T |
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| Q |
216 |
aatgtacttggccagtaatgttttctagaggtt |
248 |
Q |
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| T |
44799872 |
aatgtacttggccagtaatgttttctagaggtt |
44799840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 35 - 192
Target Start/End: Complemental strand, 44803904 - 44803747
Alignment:
| Q |
35 |
ggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatctt |
134 |
Q |
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| T |
44803904 |
ggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtcttacaaaatatctt |
44803805 |
T |
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| Q |
135 |
ccctttgtcagtaaaatgtgaatgtatacaagtaattgtgaaggaagcaaacctgata |
192 |
Q |
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| T |
44803804 |
ccctttaggagtaaaatgtgaatatgtacaaataattgtgaaggaagcaaacctgata |
44803747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 44786731 - 44786614
Alignment:
| Q |
39 |
ctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccct |
138 |
Q |
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| T |
44786731 |
ctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttgctcaggggcgtcataccaaatatataccct |
44786632 |
T |
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| Q |
139 |
ttgtcagtaaaatgtgaa |
156 |
Q |
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| T |
44786631 |
ttatcagtaaaatgtgaa |
44786614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 156
Target Start/End: Complemental strand, 44792078 - 44791980
Alignment:
| Q |
58 |
tagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
156 |
Q |
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| T |
44792078 |
tagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaagggcgtcataccaaatatattccctttgtaagtaaaatgtgaa |
44791980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 44788388 - 44788292
Alignment:
| Q |
60 |
gctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
156 |
Q |
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| T |
44788388 |
gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatatttcctttatcactaaaatgtgaa |
44788292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 44797013 - 44796894
Alignment:
| Q |
18 |
attgtgattgataacaaggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggc |
117 |
Q |
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| T |
44797013 |
attgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttgctcaagggc |
44796914 |
T |
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| Q |
118 |
gtcataccaagtatcttccc |
137 |
Q |
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| T |
44796913 |
gtcatacaaaatttcttccc |
44796894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 44783782 - 44783661
Alignment:
| Q |
35 |
ggttctacgagtaggaaataccatagctgttataagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatctt |
134 |
Q |
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|||||||||||||||||| ||||||||| ||||| | ||||| |||||||||||||| |||||| |||||||||| || |||||||||| |||||| |
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| T |
44783782 |
ggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtcataccacatatctt |
44783683 |
T |
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| Q |
135 |
ccctttgtcagtaaaatgtgaa |
156 |
Q |
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| T |
44783682 |
tccattactagtaaaatgtgaa |
44783661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 44796872 - 44796826
Alignment:
| Q |
144 |
agtaaaatgtgaatgtatacaagtaattgtgaaggaagcaaacctga |
190 |
Q |
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| T |
44796872 |
agtaaaatgtgaatatgtacaagtaattgtgaaggaagcaaagctga |
44796826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 36681351 - 36681410
Alignment:
| Q |
97 |
gccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa |
156 |
Q |
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| T |
36681351 |
gccaaatttttgctcgggggcgtcataccaaatatattccctttatcagtaaaatgtgaa |
36681410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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