View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_high_11 (Length: 416)
Name: NF16244_high_11
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 127 - 398
Target Start/End: Complemental strand, 46364566 - 46364294
Alignment:
| Q |
127 |
tataatggatgaccatattaacaaatgcacctgaggttggagtaaaacaagttgccgctcattggatatgttttataagttggagtaattaacacnnnnn |
226 |
Q |
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| T |
46364566 |
tataatggatgaccatattaacaaatgcacatgaggttggagtaaaacaagttgccgctcattggatatgttttataagttggagtaattaacacttttt |
46364467 |
T |
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| Q |
227 |
nn-aaccctcggattctcgctgatagagtcaaaagtgttgaccctctgattctcataggaagagtcaaaaattatttcattcaagaatcgaacttaaatc |
325 |
Q |
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| T |
46364466 |
tttaaccctcggattctcactgacagagtcaaaagtgttaaccctctgattctcataggaagagtcaaaaattatttcattcaagaatcgaacttaaatc |
46364367 |
T |
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| Q |
326 |
cttatnnnnnnnctcgtcttatagtgaaattcattaaccagtcaattgtttagtttactaattggcactttgt |
398 |
Q |
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| T |
46364366 |
tttataaaaaaactcgccttatagtgaaattcattaatcagtcaattgtttagtttactaattggcactttgt |
46364294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 46365091 - 46364954
Alignment:
| Q |
1 |
ggagaaaatggcagcaagacattttacattaactgcagacttgttgttcctctctggggaatccaatgtgacagtgctagaatgccgtctttttcaatat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46365091 |
ggagaaaatggcagcaagacattttacattaactgcagacttgttgttcctctctggggaatccaatgtgacaatgctagaatgccgtctttttcaatat |
46364992 |
T |
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| Q |
101 |
ttcaaa-------tttctattctttgcattaagtataa |
131 |
Q |
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| T |
46364991 |
ttcaaatttcaaatttctattctttgcattaagtataa |
46364954 |
T |
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