View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_high_19 (Length: 299)

Name: NF16244_high_19
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_high_19
NF16244_high_19
[»] chr8 (26 HSPs)
chr8 (19-282)||(44140988-44141251)
chr8 (48-218)||(13384656-13384819)
chr8 (107-218)||(32927864-32927975)
chr8 (101-211)||(38868464-38868574)
chr8 (112-217)||(4662906-4663011)
chr8 (101-218)||(37684371-37684488)
chr8 (121-191)||(38537387-38537457)
chr8 (110-193)||(36200159-36200242)
chr8 (86-192)||(26668503-26668609)
chr8 (112-174)||(41318825-41318887)
chr8 (133-218)||(26100148-26100233)
chr8 (133-211)||(15677824-15677903)
chr8 (135-210)||(35494990-35495065)
chr8 (113-186)||(10367973-10368046)
chr8 (23-82)||(10367896-10367955)
chr8 (133-202)||(7244619-7244688)
chr8 (110-218)||(16972066-16972174)
chr8 (86-150)||(35525363-35525427)
chr8 (86-205)||(463128-463247)
chr8 (133-204)||(32994258-32994329)
chr8 (23-102)||(35494916-35494995)
chr8 (133-218)||(18355852-18355935)
chr8 (118-170)||(1836262-1836315)
chr8 (223-272)||(29512900-29512949)
chr8 (110-150)||(4950459-4950499)
chr8 (110-218)||(32767362-32767470)
[»] chr4 (44 HSPs)
chr4 (19-282)||(50061567-50061829)
chr4 (110-210)||(32818380-32818480)
chr4 (27-202)||(35064962-35065130)
chr4 (86-218)||(9064182-9064314)
chr4 (91-211)||(49138772-49138891)
chr4 (110-211)||(26617443-26617544)
chr4 (24-262)||(21691160-21691409)
chr4 (112-194)||(55186988-55187070)
chr4 (24-218)||(16551853-16552038)
chr4 (133-205)||(8604637-8604709)
chr4 (91-211)||(53913586-53913706)
chr4 (110-208)||(30472909-30473007)
chr4 (31-174)||(46344878-46345013)
chr4 (101-192)||(9134576-9134667)
chr4 (101-268)||(39733582-39733756)
chr4 (101-218)||(39386599-39386716)
chr4 (23-162)||(49138894-49139025)
chr4 (137-218)||(52965856-52965937)
chr4 (112-211)||(41370021-41370118)
chr4 (86-202)||(43868087-43868203)
chr4 (117-175)||(11271582-11271641)
chr4 (110-167)||(25319022-25319080)
chr4 (112-186)||(30889764-30889838)
chr4 (18-84)||(33843581-33843647)
chr4 (23-186)||(2635058-2635214)
chr4 (110-186)||(18597014-18597091)
chr4 (110-207)||(20712827-20712924)
chr4 (23-80)||(33456269-33456326)
chr4 (154-219)||(45011893-45011958)
chr4 (133-205)||(30357510-30357582)
chr4 (118-150)||(33843661-33843693)
chr4 (219-270)||(9134708-9134759)
chr4 (115-186)||(25927288-25927359)
chr4 (105-211)||(31012747-31012854)
chr4 (113-186)||(2206377-2206451)
chr4 (18-60)||(56013913-56013955)
chr4 (110-218)||(22683838-22683947)
chr4 (101-218)||(53713563-53713680)
chr4 (23-173)||(54705437-54705581)
chr4 (23-63)||(29728917-29728957)
chr4 (89-153)||(37353400-37353464)
chr4 (89-153)||(37365374-37365438)
chr4 (98-150)||(52061404-52061456)
chr4 (110-218)||(55927772-55927880)
[»] scaffold0168 (1 HSPs)
scaffold0168 (23-190)||(31721-31881)
[»] chr6 (28 HSPs)
chr6 (23-270)||(4910803-4911053)
chr6 (35-210)||(3481946-3482121)
chr6 (23-192)||(5724658-5724820)
chr6 (110-208)||(6654102-6654200)
chr6 (27-218)||(25195368-25195550)
chr6 (120-204)||(7952725-7952809)
chr6 (110-218)||(16540082-16540190)
chr6 (110-218)||(1485148-1485256)
chr6 (133-192)||(6895978-6896037)
chr6 (111-218)||(26280581-26280688)
chr6 (110-184)||(765422-765496)
chr6 (110-191)||(2234490-2234571)
chr6 (214-268)||(4908051-4908105)
chr6 (115-191)||(852512-852588)
chr6 (53-155)||(2008403-2008498)
chr6 (110-186)||(10400729-10400805)
chr6 (112-143)||(24974192-24974223)
chr6 (112-218)||(434239-434345)
chr6 (133-211)||(25195848-25195926)
chr6 (112-218)||(34620863-34620969)
chr6 (112-218)||(34748300-34748406)
chr6 (112-150)||(35098244-35098282)
chr6 (114-170)||(10564974-10565031)
chr6 (158-211)||(17225875-17225928)
chr6 (110-161)||(2234272-2234324)
chr6 (134-162)||(14993077-14993105)
chr6 (152-208)||(19601457-19601513)
chr6 (23-83)||(31710512-31710572)
[»] chr2 (24 HSPs)
chr2 (104-270)||(33019096-33019272)
chr2 (23-193)||(30503104-30503267)
chr2 (110-219)||(10644578-10644687)
chr2 (88-218)||(11504064-11504193)
chr2 (23-82)||(33047683-33047742)
chr2 (110-192)||(2002723-2002805)
chr2 (110-216)||(31453358-31453464)
chr2 (126-191)||(42740968-42741033)
chr2 (114-218)||(16518758-16518861)
chr2 (105-211)||(22535968-22536074)
chr2 (101-210)||(3352042-3352151)
chr2 (116-218)||(42982523-42982627)
chr2 (111-218)||(33502223-33502320)
chr2 (86-211)||(12037012-12037137)
chr2 (133-218)||(26032037-26032122)
chr2 (133-197)||(43501123-43501187)
chr2 (110-145)||(1976940-1976975)
chr2 (112-150)||(680347-680385)
chr2 (111-153)||(32777946-32777988)
chr2 (138-211)||(5533040-5533113)
chr2 (23-80)||(7629757-7629814)
chr2 (109-186)||(21659693-21659770)
chr2 (110-170)||(37561681-37561742)
chr2 (217-269)||(13912879-13912931)
[»] chr5 (28 HSPs)
chr5 (112-270)||(42858085-42858253)
chr5 (27-192)||(11647981-11648139)
chr5 (115-206)||(14299310-14299401)
chr5 (118-219)||(9818717-9818819)
chr5 (133-218)||(6951307-6951392)
chr5 (128-217)||(38845436-38845525)
chr5 (23-268)||(18851024-18851272)
chr5 (101-219)||(28110439-28110557)
chr5 (23-80)||(38845644-38845701)
chr5 (86-162)||(27374349-27374425)
chr5 (112-218)||(42439619-42439726)
chr5 (110-192)||(34250379-34250461)
chr5 (101-211)||(36290001-36290111)
chr5 (115-211)||(13171769-13171866)
chr5 (23-206)||(22226250-22226426)
chr5 (110-191)||(36639912-36639993)
chr5 (133-209)||(39097244-39097320)
chr5 (111-163)||(43268467-43268519)
chr5 (115-218)||(31906239-31906342)
chr5 (91-211)||(5468729-5468850)
chr5 (133-211)||(18637282-18637358)
chr5 (110-186)||(1105414-1105492)
chr5 (23-80)||(3043137-3043194)
chr5 (118-147)||(22572511-22572540)
chr5 (91-140)||(29922582-29922631)
chr5 (110-175)||(32980519-32980583)
chr5 (115-170)||(3970450-3970506)
chr5 (138-186)||(8121547-8121595)
[»] chr1 (33 HSPs)
chr1 (23-218)||(28083890-28084078)
chr1 (136-270)||(30557505-30557647)
chr1 (110-218)||(6021779-6021887)
chr1 (142-218)||(7524120-7524196)
chr1 (111-218)||(38797631-38797738)
chr1 (112-218)||(3016140-3016245)
chr1 (137-218)||(11049252-11049333)
chr1 (109-211)||(1514317-1514419)
chr1 (111-186)||(31362239-31362310)
chr1 (18-197)||(36780139-36780312)
chr1 (24-272)||(2099625-2099873)
chr1 (133-218)||(7790644-7790729)
chr1 (101-218)||(47321909-47322025)
chr1 (122-186)||(48549046-48549110)
chr1 (93-211)||(3416038-3416156)
chr1 (101-203)||(34387710-34387812)
chr1 (115-229)||(50571264-50571377)
chr1 (91-206)||(34721854-34721966)
chr1 (136-218)||(30850401-30850483)
chr1 (110-208)||(50569655-50569753)
chr1 (110-192)||(51500862-51500939)
chr1 (148-269)||(4887718-4887837)
chr1 (133-210)||(28287346-28287423)
chr1 (115-191)||(10324967-10325043)
chr1 (101-192)||(3909827-3909918)
chr1 (120-202)||(33733954-33734036)
chr1 (111-163)||(5268194-5268247)
chr1 (23-80)||(8130853-8130910)
chr1 (23-80)||(15478134-15478191)
chr1 (115-204)||(15986237-15986326)
chr1 (157-218)||(34915088-34915149)
chr1 (23-84)||(45660878-45660938)
chr1 (110-159)||(47053385-47053438)
[»] chr7 (20 HSPs)
chr7 (86-217)||(41386818-41386949)
chr7 (115-218)||(40491558-40491661)
chr7 (115-192)||(15903558-15903635)
chr7 (91-191)||(27571818-27571918)
chr7 (91-190)||(22195820-22195919)
chr7 (98-208)||(35772221-35772331)
chr7 (112-191)||(28725081-28725160)
chr7 (110-191)||(5489875-5489956)
chr7 (110-167)||(36270955-36271012)
chr7 (110-170)||(40422767-40422828)
chr7 (110-186)||(44856843-44856917)
chr7 (111-191)||(30182325-30182404)
chr7 (23-80)||(46325570-46325627)
chr7 (115-219)||(25156176-25156284)
chr7 (112-150)||(45004997-45005035)
chr7 (133-174)||(17111855-17111896)
chr7 (133-218)||(38123668-38123753)
chr7 (115-191)||(1410942-1411018)
chr7 (236-276)||(22198194-22198234)
chr7 (236-276)||(22239587-22239627)
[»] chr3 (25 HSPs)
chr3 (23-192)||(25359602-25359763)
chr3 (98-208)||(40736550-40736659)
chr3 (91-189)||(54596774-54596872)
chr3 (21-84)||(52141374-52141437)
chr3 (110-211)||(32523349-32523451)
chr3 (23-80)||(1290676-1290733)
chr3 (133-218)||(52364049-52364134)
chr3 (110-174)||(7717367-7717431)
chr3 (110-219)||(35058336-35058446)
chr3 (115-191)||(37335063-37335139)
chr3 (111-211)||(44771670-44771770)
chr3 (110-177)||(1441424-1441491)
chr3 (113-208)||(35264423-35264518)
chr3 (18-80)||(52363955-52364017)
chr3 (23-80)||(3845245-3845302)
chr3 (110-218)||(36302158-36302266)
chr3 (93-141)||(48410891-48410939)
chr3 (111-150)||(30301069-30301108)
chr3 (133-188)||(35058065-35058120)
chr3 (110-169)||(41115413-41115472)
chr3 (156-218)||(31708241-31708303)
chr3 (120-218)||(40147852-40147950)
chr3 (110-208)||(47356257-47356355)
chr3 (110-150)||(38022410-38022451)
chr3 (114-191)||(44958635-44958712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (24-80)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (23-84)||(31544-31605)
[»] scaffold0024 (1 HSPs)
scaffold0024 (114-186)||(23627-23699)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 44141251 - 44140988
Alignment:
Q  19 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141251 tgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 44141152  T
Q  119 gattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141151 gattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttcaactcgctttta 44141052  T
Q  219 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaact 282  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  44141051 tccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccactaaact 44140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 13384819 - 13384656
Alignment:
Q  48 accaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 147  Q
    |||| |||||||||||||||| |||||||||||||||       ||||| || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  148 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||| ||  ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttta 13384656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 32927864 - 32927975
Alignment:
Q  107 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 206  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||| || ||||||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttc 32927963  T
Q  207 aactcgctttta 218  Q
    ||||| ||||||    
T  32927964 aactcactttta 32927975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 38868464 - 38868574
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | |||||||||||||| || ||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattta 38868563  T
Q  201 tagttcaactc 211  Q
    |||||||||||    
T  38868564 tagttcaactc 38868574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 4663011 - 4662906
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || | |||||||||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactc 4662912  T
Q  212 gctttt 217  Q
    ||||||    
T  4662911 gctttt 4662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 37684371 - 37684488
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||| |  || || ||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaattta 37684470  T
Q  201 tagttcaactcgctttta 218  Q
    || |||||||| ||||||    
T  37684471 taattcaactcactttta 37684488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 38537457 - 38537387
Alignment:
Q  121 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgattttcacac 38537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 36200242 - 36200159
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 193  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| |||||||||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 36200159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 26668503 - 26668609
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||| ||  ||  |||||||  |||| |||||| | ||||||     
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgattc 26668602  T
Q  186 tcacaca 192  Q
    |||||||    
T  26668603 tcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 174  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 26100233 - 26100148
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttta 26100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 15677903 - 15677824
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 211  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| |||| |||| ||||| || |||||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactc 15677824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 35494990 - 35495065
Alignment:
Q  135 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||| || | ||||||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaact 35495065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 10367973 - 10368046
Alignment:
Q  113 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || |||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 82  Q
    |||||||||||| |||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 7244688 - 7244619
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 202  Q
    |||||||||||||||||  || ||| ||||  ||||||||||||| ||||||||||| || |||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcacgcacaattttata 7244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 16972174 - 16972066
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||||||||||||| || | |||||| || |||||| ||| |||||||  |||| ||| |||| |||||||| | ||| || ||||| ||||||     
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa 16972075  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  16972074 tcactttta 16972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 35525363 - 35525427
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 150  Q
    |||| |||||| ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525363 ttctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 463247 - 463128
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    |||||| |||| || |||||||| ||||||||||||||||  |  | |||| |||||| |||||  || ||||||||  || |||||||||| || ||||    
T  463247 ttctaatatgtttggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattt 463148  T
Q  186 tcacacataattttatagtt 205  Q
    ||||| | || |||||||||    
T  463147 tcacaaagaaatttatagtt 463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 32994329 - 32994258
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 204  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||| | ||| || ||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagt 32994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 35494916 - 35494995
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgatt 102  Q
    ||||||||| |||||||||| |||  |||  ||||||| |||||||  | |||||||||| ||||||||||||| |||||    
T  35494916 tatgtttgggtccacttctaaaggggccatgattgattctggaggtgcacaattgattcttagttctaacatgtttgatt 35494995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 18355935 - 18355852
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||  |||||| ||||||||||  |||||||||||| | |||||||| ||||  || |||| |||||||||| ||||||    
T  18355935 aattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttttacac--aaatttaaagttcaactccctttta 18355852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  118 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 170  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 29512900 - 29512949
Alignment:
Q  223 aacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 272  Q
    ||||||| |||  |||||||| ||||||||||| ||||||||||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctcc 29512949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 4950459 - 4950499
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaag 150  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  4950459 agtagaattgattttgcctcaaaaattgattagacttgaag 4950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 32767362 - 32767470
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||||||||||| || ||| |||| |||||| | ||||||| || ||||  || |||||||||| |||  ||| ||| |||| ||| ||||| |||||||    
T  32767362 agtagaattgatattcccttcaaagttgattatgcttgaagctaagattcatagcttttgattcgagaactgacttttacacttaaatttattgttcaac 32767461  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  32767462 tcactttta 32767470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 50061829 - 50061567
Alignment:
Q  19 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061829 tgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 50061730  T
Q  119 gattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50061729 gattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatggttcaactcgctttta 50061630  T
Q  219 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaact 282  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  50061629 tccaaacacaattca-ctttagtcagaatcacttttaaccaaaatcaattctccccactgaact 50061567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 32818480 - 32818380
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||  |||| || |||||||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac 32818381  T
Q  210 t 210  Q
    |    
T  32818380 t 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  27 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 126  Q
    ||||||||||||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||| | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  127 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 202  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||| ||||| || ||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 9064182 - 9064314
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    ||||||||||| || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  186 tcacacataattttatagttcaactcgctttta 218  Q
    ||||||  || ||||  ||||||||| ||||||    
T  9064282 tcacactcaagtttacggttcaactcactttta 9064314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 49138891 - 49138772
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
    |||||| || ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||| | |    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgatttttata 49138793  T
Q  191 cataattttatagttcaactc 211  Q
    || ||  ||||||||||||||    
T  49138792 cacaagcttatagttcaactc 49138772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 26617443 - 26617544
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | |||||||| | | |||| |||||| ||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaac 26617542  T
Q  210 tc 211  Q
    ||    
T  26617543 tc 26617544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 21691409 - 21691160
Alignment:
Q  24 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattga--- 120  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||       |||| | || |||||||| ||||| |||||       
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctg-------acatatttggttgttgtcgagtagtattgattc 21691317  T
Q  121 -----ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt 215  Q
         ||||| |   | ||||||||| |||||||  || |||||||| |||||| || |||| |||||||||||||| || ||||||||||||| | |||    
T  21691316 tacttttttgacagaagaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacactt 21691217  T
Q  216 t----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaa 262  Q
    |          ||||||||||||| |||| | |||||||||||||||||| ||||||    
T  21691216 ttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 55187070 - 55186988
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacata 194  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 16551853 - 16552038
Alignment:
Q  24 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 123  Q
    ||||||||||||||||  ||||  | ||||||||||||| ||||| |||||||||||||||       ||||| || ||| |||| | ||||  |||||     
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctga-------catgtatggttgctgtcgaatagagctgattc 16551945  T
Q  124 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||| |  || |||||| ||||||| |||||||||||  ||||  ||||||| |||||||||||||  || ||||||||||||||| ||||||    
T  16551946 tgcctctaggatggattctccttgaagctaggatttgtagtttttagttctagaattgattttcacac--aaatttatagttcaactcactttta 16552038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 205  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||||| || |||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 53913706 - 53913586
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
    |||||| || |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || ||||| |   || |||||||| | ||||||||||||    
T  53913706 acatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcaca 53913607  T
Q  191 cataattttatagttcaactc 211  Q
    ||||| ||||||||| |||||    
T  53913606 cataaatttatagttaaactc 53913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 30472909 - 30473007
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| |||||||||||| |||  ||||||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgattttcacatatatatttatagttcaa 30473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 46345013 - 46344878
Alignment:
Q  31 gttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctcc 130  Q
    ||||||||||||||||  |||||||||||| ||||||| || |||| |||||||       ||||| || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  131 aaaattgattctacttgaagttaggatttgtaccttttgattct 174  Q
    | |||| ||||||||||||||||| ||||  | |||||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattct 46344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 9134576 - 9134667
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 268
Target Start/End: Complemental strand, 39733756 - 39733582
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| |||||| ||||||| |  ||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgattatcacacaca--ttta 39733660  T
Q  201 tagttcaactcgcttt----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 268  Q
     ||||||||||  |||          ||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  39733659 aagttcaactccttttttcataaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 218
Target Start/End: Original strand, 39386599 - 39386716
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||| | ||||||||||||| || ||| |||||||||||||||| ||| ||  |||| || | ||| |||||| | |||||||||||||| |  ||||    
T  39386599 ttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatattta 39386698  T
Q  201 tagttcaactcgctttta 218  Q
     |||||||||| ||||||    
T  39386699 aagttcaactcactttta 39386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 49139025 - 49138894
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||||||||||||||||||| ||   |||||||||||| | ||||| ||||||||||||||       |||||| || ||||| || |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctg-------acatgtttggttgttttcaagtaaaattgatt 49138933  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgta 162  Q
     ||||| |||  ||| |||||||||||| |||||||||||    
T  49138932 gtgcctgcaagcttg-ttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 52965937 - 52965856
Alignment:
Q  137 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||||||||||||||  |||| || |||||||||||| | |||||| | |||||||| |||||| |||||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcactttta 52965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 41370118 - 41370021
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||   || ||| |||||||||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt--gacgtaaatttatagttcaactc 41370021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 43868087 - 43868203
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    ||||||||||| || ||| | || ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | || | |||| ||||    
T  43868087 ttctaacatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagcttttaactcaaaagttaattt 43868186  T
Q  186 tcacacataattttata 202  Q
    | ||| |||| ||||||    
T  43868187 ttacatataaatttata 43868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  117 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 175  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 167  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| ||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 33843581 - 33843647
Alignment:
Q  18 atgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 84  Q
    |||| ||||||||||| ||||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843581 atgtgtatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 2635058 - 2635214
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    ||||||||||| ||||| |||||| ||||||||||||| | || || || |||||||| |||       ||||| |||||| | |  ||||||| |||||    
T  2635058 tatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttga-------catgtttgattgcttttaagtagaactgatt 2635150  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||| |||||||| | ||||||| |||   ||| | ||||||| |||||| ||||||||    
T  2635151 ttgcctccagaattgattatgcttgaagctagagattggagcttttgagtctagaattgatttt 2635214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 207
Target Start/End: Complemental strand, 20712924 - 20712827
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttca 207  Q
    |||| ||||||||||||||||  ||  |||||||||||||| ||  |||||||  |||| |||  ||| |||||||||||||| |||||| |||||||    
T  20712924 agtaaaattgattttgcctcccgaaacgattctacttgaagctaaaatttgtagttttttattgaagaattgattttcacacacaattttgtagttca 20712827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    |||||||||||||||||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 45011893 - 45011958
Alignment:
Q  154 ggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttat 219  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||| ||  |||| |||||||    
T  45011893 ggatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttat 45011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 30357510 - 30357582
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 205  Q
    |||||||||||||||||| |  |||||||| ||||||||| || | |||||||| ||||| || |||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  118 tgattttgcctccaaaattgattctacttgaag 150  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 9134708 - 9134759
Alignment:
Q  219 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 270  Q
    |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  9134708 tccaaacacaattcacttttagccagaaccacttctaaccaaaatcaattct 9134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 25927288 - 25927359
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| ||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttt 25927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 31012854 - 31012747
Alignment:
Q  105 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatag 203  Q
    |||| ||||||| ||||||||  | || |||||||||||||  ||  |||||||||||  |||| ||| |||| |||| ||||||||||||  |||||||    
T  31012854 tgtcgagtagaactgattttgatttcagaattgattctactcaaaactaggatttgtagtttttaattttagaattgatttttcacacatatatttatag 31012755  T
Q  204 ttcaactc 211  Q
    ||||||||    
T  31012754 ttcaactc 31012747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 2206451 - 2206377
Alignment:
Q  113 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttt 2206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 56013955 - 56013913
Alignment:
Q  18 atgtatatgtttggttccacttctagaggaaccaaaattgatt 60  Q
    |||||||||||||||||| |||||||| |||||| ||||||||    
T  56013955 atgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 22683838 - 22683947
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    |||| ||||||||||||||||| |||| ||| || ||||||| || ||| |||| ||||||| |||| |  ||||||| |||   || ||||| ||||||    
T  22683838 agtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaa 22683937  T
Q  209 ctcgctttta 218  Q
    ||||||||||    
T  22683938 ctcgctttta 22683947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 53713680 - 53713563
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||| | ||||||| ||||||  || | |||| ||| ||||||||| || |||||||| |||||||||||| | |||| || |||| | |  | ||    
T  53713680 ttgttgtcgaatagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatata 53713581  T
Q  201 tagttcaactcgctttta 218  Q
    ||||||||||| ||||||    
T  53713580 tagttcaactcactttta 53713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 54705581 - 54705437
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    ||||||||||||||||||||||||  |||||||||  | || |||| || ||||||||| ||       ||||| || ||| |  | |||| ||||||||    
T  54705581 tatgtttggttccacttctagaggggccaaaattggctatgaaggtatataattgattcaga-------catgtttggttgctcacaagtataattgatt 54705489  T
Q  123 ttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattc 173  Q
    ||||||| | ||||||| || |||||||| |||| |||||| ||||||||||    
T  54705488 ttgcctcaataattgatactaacttgaagctagggtttgtagcttttgattc 54705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 29728917 - 29728957
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttg 63  Q
    |||| |||||||||||| ||||||| |||||||||||||||    
T  29728917 tatgattggttccacttttagaggatccaaaattgattttg 29728957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 37353400 - 37353464
Alignment:
Q  89 taacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtta 153  Q
    |||||||| || ||||| || ||||||||||| |||| ||| |||||||||||| ||| ||||||    
T  37353400 taacatgtttgcttgttttcgagtagaattgactttgtctctaaaattgattctgcttaaagtta 37353464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 37365374 - 37365438
Alignment:
Q  89 taacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtta 153  Q
    |||||||| || ||||| || ||||||||||| |||| ||| |||||||||||| ||| ||||||    
T  37365374 taacatgtttgcttgttttcgagtagaattgactttgtctctaaaattgattctgcttaaagtta 37365438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 52061404 - 52061456
Alignment:
Q  98 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 150  Q
    ||||||||||  |||||||||||||||| | | | ||||||||||||||||||    
T  52061404 tgattgttgttgagtagaattgattttggccctagaattgattctacttgaag 52061456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 55927880 - 55927772
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||| |||||||||||||| || ||||||||| |||||| | ||  | ||||| ||| |||||||||| |||||  ||||||  || ||||| ||||||     
T  55927880 agtataattgattttgccttcagaattgattccacttgaggctaaaaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaag 55927781  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  55927780 tcactttta 55927772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 31721 - 31881
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||||       ||||| || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcaca 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 4910803 - 4911053
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    ||||||||||||||||| |||||  || | |||||||| || | || |||||||||||||||       ||||| || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------ 216  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||| | || |||||||||| |||| ||||          
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacata 4910995  T
Q  217 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 270  Q
        |||||||||| || |||| |||||||||||| ||||||| ||||||| ||||||    
T  4910996 aatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 3481946 - 3482121
Alignment:
Q  35 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 134  Q
    ||||| |||||| | || |||||||| || | || |||||||||||||||||| | |||||| |||||||||||  |||||||||||| || ||  | ||    
T  3481946 cacttttagagggatcataattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaa 3482045  T
Q  135 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    |||||| |||||||||||| |||||||| | ||||||| |||| |||||||||||||| || ||||||||||||||    
T  3482046 ttgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 5724820 - 5724658
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    ||||||||||||||||||||||||  |||||||| ||| | || || |||||||||||||||       ||||| ||  || | ||  ||||||||||||    
T  5724820 tatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaattgatt 5724728  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||    
T  5724727 ttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 6654200 - 6654102
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 25195550 - 25195368
Alignment:
Q  27 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 126  Q
    |||||||||||||||||||||||||||||||||| |||| || || |||||||||||       |||||| || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  127 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | |||||||||| ||| || |||| | |||||||| ||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcactttta 25195368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 7952809 - 7952725
Alignment:
Q  120 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 204  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||  ||||||||| || ||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttatagt 7952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 16540082 - 16540190
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||| ||||||  | |  ||||||||| |||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaac 16540181  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  16540182 tcactttta 16540190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 1485256 - 1485148
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| |||||||| ||||  || ||||| |||||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaac 1485157  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  1485156 tcactttta 1485148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 6896037 - 6895978
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcaca 6895978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 26280581 - 26280688
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | |||||||| ||  | || ||||||||| ||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaact 26280680  T
Q  211 cgctttta 218  Q
    | ||||||    
T  26280681 cactttta 26280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 184  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 2234490 - 2234571
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| |||||||| ||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacac 2234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 4908051 - 4908105
Alignment:
Q  214 ttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 268  Q
    |||||||||||||||| |||| |||||  ||||||||||||| ||||||||||||    
T  4908051 ttttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 852512 - 852588
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||| ||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 2008498 - 2008403
Alignment:
Q  53 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 152  Q
    |||||||||||||||| |||||||| ||||||       ||||| |||||||| || ||||||||| |||||| ||||| |||  ||||||||||||| |    
T  2008498 aattgattttggaggtgtagaattgtttctga-------catgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagct 2008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | ||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 143
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  112 tagaattgattttgcctccaaaattgattcta 143  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 434345 - 434239
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||||||| | | || |||||||| || |||||||||  |||  || ||||||||| |||| |||||||| | |||||| |||| | ||||||||    
T  434345 tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc 434246  T
Q  212 gctttta 218  Q
     ||||||    
T  434245 actttta 434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 25195848 - 25195926
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||||| || ||  |||||||| || |||||||||||||| |||| ||  ||||| || |||||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactc 25195926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 34620863 - 34620969
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34620863 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34620962  T
Q  212 gctttta 218  Q
     ||||||    
T  34620963 actttta 34620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 34748300 - 34748406
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34748300 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34748399  T
Q  212 gctttta 218  Q
     ||||||    
T  34748400 actttta 34748406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaag 150  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  114 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 170  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 17225875 - 17225928
Alignment:
Q  158 ttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||| |||||||||||||| |||||||| ||| | || |||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactc 17225928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 2234324 - 2234272
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgt 161  Q
    |||||||||||||||||||||  |||||||||| || |||||||| |||||||    
T  2234324 agtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgt 2234272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 14993077 - 14993105
Alignment:
Q  134 attgattctacttgaagttaggatttgta 162  Q
    |||||||||||||||||||||||||||||    
T  14993077 attgattctacttgaagttaggatttgta 14993105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 19601513 - 19601457
Alignment:
Q  152 taggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    ||||||||||| |||||||||||| |  ||||||| ||| |||| ||||||||||||    
T  19601513 taggatttgtagcttttgattctataactgatttttacaaataaatttatagttcaa 19601457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 31710572 - 31710512
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctg 83  Q
    ||||||||||||| ||| |||||  |||| |||||||| |||| || ||||||||||||||    
T  31710572 tatgtttggttcctcttttagagagaccataattgattgtggatgtgtagaattgattctg 31710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 33019272 - 33019096
Alignment:
Q  104 ttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 203  Q
    ||||| |||| |||||||| |||||| | |||||||| || |||||| ||| ||||||| |||||| || |||| ||||||||||||||||| |||||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  204 ttcaactcgctttt----------atccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 270  Q
    |||||||| |||||          |||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  33019172 ttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 30503104 - 30503267
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||| ||||||||||||||| |||   |||||||||||||||| || |||||||||||||       |||||||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 193  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||| ||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 10644578 - 10644687
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  |||| ||| |||| || | ||||| |||||| |||||||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaac 10644677  T
Q  210 tcgcttttat 219  Q
    || |||||||    
T  10644678 tcacttttat 10644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 11504193 - 11504064
Alignment:
Q  88 ctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttc 187  Q
    ||||||||| |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| |||| ||| |||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttc 11504095  T
Q  188 acacataattttatagttcaactcgctttta 218  Q
    ||||| ||  |||||||||||||| ||||||    
T  11504094 acacacaaagttatagttcaactcactttta 11504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 82  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 2002805 - 2002723
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||| |||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 31453358 - 31453464
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||  | ||||||||||| || || |||| |||| |||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttcacgcacaaatttagagtttaac 31453457  T
Q  210 tcgcttt 216  Q
    || ||||    
T  31453458 tcacttt 31453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 42740968 - 42741033
Alignment:
Q  126 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 16518758 - 16518861
Alignment:
Q  114 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 213  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| ||||||||| || || ||| ||| || || || ||||||||||||||| |    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgattata-agatgacttttacgcacaaatttatagttcaactcac 16518856  T
Q  214 tttta 218  Q
    |||||    
T  16518857 tttta 16518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 22535968 - 22536074
Alignment:
Q  105 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 204  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||  |||| |  ||||||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacatatttatagt 22536067  T
Q  205 tcaactc 211  Q
    | |||||    
T  22536068 taaactc 22536074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 3352042 - 3352151
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 3352141  T
Q  201 tagttcaact 210  Q
    |  |||||||    
T  3352142 tgtttcaact 3352151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 42982523 - 42982627
Alignment:
Q  116 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 213  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||| ||||| || |||||  | |||||| |    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcac 42982622  T
Q  214 tttta 218  Q
    |||||    
T  42982623 tttta 42982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 33502223 - 33502320
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||||||||||||||||||| |||||||||||||          ||||||| |||||||||||| | |||||||| ||||| |  ||||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact----------atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaact 33502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 12037012 - 12037137
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    ||||||||||| || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  186 tcacacataattttatagttcaactc 211  Q
    ||| | | || ||||| |||||||||    
T  12037112 tcataaacaaatttatggttcaactc 12037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 26032122 - 26032037
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||||| ||||||||||||| ||||||| | |||||||||  | |||| ||  |||||||| |||||| |||||||| ||||||    
T  26032122 aattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcactttta 26032037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 43501123 - 43501187
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 197  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| |||||| | ||||| ||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaatt 43501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctact 145  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaag 150  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagtta 153  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 5533113 - 5533040
Alignment:
Q  138 attctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||||||| ||  ||||||| |||||||||||  | |||||||  |||||||| |||||| ||||||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactc 5533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 7629757 - 7629814
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||||||||| | ||||| |||| ||||||| | ||||| |||||||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgatt 7629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 21659693 - 21659770
Alignment:
Q  109 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| ||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgatttt 21659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 170  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 13912879 - 13912931
Alignment:
Q  217 tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattc 269  Q
    ||||||||||||| |||| ||| |||||||| | ||||| |||||||||||||    
T  13912879 tatccaaacacaaatcactttttgtcagaattaattttaaccaaaatcaattc 13912931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 270
Target Start/End: Original strand, 42858085 - 42858253
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | |||||||||||||| || |||||||||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  212 gct----------tttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 270  Q
     ||          ||||| ||||||||  |||| |||||||||||||| ||||| ||||||||||||||    
T  42858185 acttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattct 42858253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  27 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 126  Q
    ||||| |||||||||||||| |||| |||||||||||| ||| || |||||||| |||       ||||| |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  127 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 14299310 - 14299401
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 206  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 9818717 - 9818819
Alignment:
Q  118 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactcgcttt 216  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||| |||| | ||| || ||||||||||||||| ||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  217 tat 219  Q
    |||    
T  9818817 tat 9818819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 6951392 - 6951307
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||| |||||| ||||| || ||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcactttta 6951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 38845436 - 38845525
Alignment:
Q  128 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttt 217  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||||| || | ||||||| ||||| |||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttt 38845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 18851272 - 18851024
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||       || ||| || ||| | || | ||||||||||     
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctg-------acgtgtttggttgctatcaattagaattgatc 18851180  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt------- 215  Q
     |  | | | |||||||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |  ||||||||| ||||| |||           
T  18851179 ctatccctataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatg 18851080  T
Q  216 ---ttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 268  Q
       ||||||||||||||  ||| |||||||| ||| ||||||| ||||||||||||    
T  18851079 aagttatccaaacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 28110557 - 28110439
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||||| | ||||||||| ||  |  |||||||||| || || ||||| ||||||||| ||||||||| |||| |||||||||||||| || ||||    
T  28110557 ttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaattta 28110458  T
Q  201 tagttcaactcgcttttat 219  Q
    ||||| ||||| |||||||    
T  28110457 tagttgaactcacttttat 28110439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 27374425 - 27374349
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 162  Q
    |||| |||||| || ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374425 ttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 42439726 - 42439619
Alignment:
Q  112 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| |||| |  ||||||| ||||  |||||||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T
Q  211 cgctttta 218  Q
    | ||||||    
T  42439626 cactttta 42439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| |||||||||||| | ||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 36290001 - 36290111
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | |||||||||| ||| |  ||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgattttcagacacatattta 36290100  T
Q  201 tagttcaactc 211  Q
    |||||||||||    
T  36290101 tagttcaactc 36290111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 13171866 - 13171769
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 211  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  ||||||||||| |  ||| |||||| ||| || ||||||||| |||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattctataaatgatttttcatacaaaaatttatagttaaactc 13171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 22226426 - 22226250
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| || ||||||||||||||       |||||| || |||||||| | || ||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctg-------acatgtttggttgttgtcgactaaaattgatt 22226334  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 206  Q
    |||  |     ||||||||||||||||| ||| ||||||| ||||||||| |||| || | ||| ||||| || |||| |||||    
T  22226333 ttgttttgttgattgattctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttc 22226250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 36639912 - 36639993
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||| ||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 39097244 - 39097320
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||||||||||||||||| ||  ||||||| ||||| ||| || | ||||||||||||||||| |||| ||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaatttaaagttcaac 39097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 163  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 31906239 - 31906342
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 214  Q
    ||||| |||| |||| | |||||||| ||||||||| || |||||||| ||||||||| || | ||||| ||  || |||| ||||||||||||||| ||    
T  31906239 aattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcact 31906338  T
Q  215 ttta 218  Q
    ||||    
T  31906339 ttta 31906342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 5468729 - 5468850
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta-gagttgattttcac 189  Q
    |||||| ||||||||||| | || |||||||| |||||||| | ||||||||||||||   |||||||| ||  |||| ||| ||  | ||||||||||     
T  5468729 acatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttgagactaggatttataatttttaattttataatttgattttcat 5468828  T
Q  190 acataattttatagttcaactc 211  Q
    ||| || |||||||||||||||    
T  5468829 acacaaatttatagttcaactc 5468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 18637282 - 18637358
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||| |||||||| || |||  ||| |||||||||||||| |||||||| ||||| |  |||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacaca--tttatagttcaactc 18637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 186  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 3043194 - 3043137
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||| ||||||||||| | |||||| ||||||||||| | ||||| |||||||||||    
T  3043194 tatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgatt 3043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  118 tgattttgcctccaaaattgattctacttg 147  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgatt 140  Q
    |||||| |||||||| || |||||||||||||||||||| | ||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 175  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 3970506 - 3970450
Alignment:
Q  115 aattgattttgcctccaaaattgattctact-tgaagttaggatttgtaccttttga 170  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||| ||||| |||||||    
T  3970506 aattgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttga 3970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 8121547 - 8121595
Alignment:
Q  138 attctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||| ||||||| | ||||| ||| |||||||||||||||||||    
T  8121547 attctacttaaagttagaaattgtagcttctgattctagagttgatttt 8121595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 28084078 - 28083890
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    |||||||| |||||||||||||||| |||||||||| | |||  || |||||||||||||||       ||| | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||| || |  |||||||||||||||||| ||| ||||||| |||||||||||| | || ||||| ||||| || |||  |||||| ||| ||||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcactttta 28083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 270
Target Start/End: Original strand, 30557505 - 30557647
Alignment:
Q  136 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt----------tatccaaac 225  Q
    |||||||| |||||| |||||||||||  ||||||||||||| |||||||||||||  || ||||||||||||||| ||||          |||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaac 30557602  T
Q  226 acaattcacctttagtcagaatcacttttacccaaaatcaattct 270  Q
    |||| |||| | |||||||| ||||||||| ||||||||||||||    
T  30557603 acaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 6021779 - 6021887
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| |||||||||||| | | |||||| ||||  || ||||| |||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaac 6021878  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  6021879 tcactttta 6021887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 7524120 - 7524196
Alignment:
Q  142 tacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||| ||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcactttta 7524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 38797738 - 38797631
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||||||| || |||||||  |||||||| |||||||||||| |||||||| ||| | | || ||| |||||||||||||| || ||||||||||||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaact 38797639  T
Q  211 cgctttta 218  Q
    | ||||||    
T  38797638 cactttta 38797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 3016140 - 3016245
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 211  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| ||||  |||||||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactc 3016238  T
Q  212 gctttta 218  Q
     ||||||    
T  3016239 actttta 3016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 11049252 - 11049333
Alignment:
Q  137 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||||||||| || ||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcactttta 11049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 1514317 - 1514419
Alignment:
Q  109 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||| ||||| || ||||| ||||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaa 1514416  T
Q  209 ctc 211  Q
    |||    
T  1514417 ctc 1514419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 31362310 - 31362239
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| ||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 36780312 - 36780139
Alignment:
Q  18 atgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaat 117  Q
    ||||||||||||| ||  |||| |||||| |||| |||||||| ||||||| ||||||||||| |||        |||| || |||||||| ||| | ||    
T  36780312 atgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgat-------atgtttggttgttgtcgagttgtat 36780220  T
Q  118 tgattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgattttcacacataatt 197  Q
    | |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||| ||| |||||    
T  36780219 taattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgattttcgcacgtaatt 36780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 272
Target Start/End: Complemental strand, 2099873 - 2099625
Alignment:
Q  24 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 123  Q
    ||||||||||||  ||||||||||   | |||||||| ||||||| ||||||||||| ||| ||       || |||||| |||| |||||||||||||     
T  2099873 atgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgactt-------gtttgattgatgtcgagtagaattgattg 2099783  T
Q  124 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------- 216  Q
    |  ||||| |||||||| || |||||| |  ||||||||  ||||| || |||| ||||||||||||||||| ||||||| |||||||  |||           
T  2099782 t--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacataaatttatagctcaactcattttttatatg 2099685  T
Q  217 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 272  Q
        ||||||||||||| |||| |||| ||| ||| ||||||| ||||||||||||||||    
T  2099684 aatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattctcc 2099625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 7790729 - 7790644
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 47322025 - 47321909
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| |||||||||| ||| || ||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgattttcatacacaaattta 47321927  T
Q  201 tagttcaactcgctttta 218  Q
    |||||||| || ||||||    
T  47321926 tagttcaattcactttta 47321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 48549110 - 48549046
Alignment:
Q  122 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| ||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 3416038 - 3416156
Alignment:
Q  93 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||| ||||||| ||  |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||| |||||    
T  3416038 atgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacaca 3416137  T
Q  193 taattttatagttcaactc 211  Q
     || ||||||||| |||||    
T  3416138 caaatttatagtttaactc 3416156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 34387812 - 34387710
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 200  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 34387713  T
Q  201 tag 203  Q
    |||    
T  34387712 tag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 50571264 - 50571377
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 214  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||  |||| |||| ||| ||  ||||||||||| ||  |    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttcaattc-at 50571362  T
Q  215 tttatccaaacacaa 229  Q
    | |||||||||||||    
T  50571363 tatatccaaacacaa 50571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 34721966 - 34721854
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
    |||||| ||||||||||  | || ||||||||||||||  | ||||||||||   ||||||||||||||||   |||| |||||| | ||||||||||||    
T  34721966 acatgtttgattgttgttaaatataattgattttgcctttagaattgattct---tgaagttaggatttgttgttttttattctataattgattttcaca 34721870  T
Q  191 cataattttatagttc 206  Q
    || || ||||||||||    
T  34721869 cacaaatttatagttc 34721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 30850483 - 30850401
Alignment:
Q  136 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||||||||||  |||||||||||  |||| ||| |||| |||||||| ||| | || ||||||||||||||| ||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcactttta 30850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 50569753 - 50569655
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    ||||||||||||||| |||| |||||| || || ||||||  |||||| |||| ||||||| |||| | |||| ||||||| | || ||||||||||||    
T  50569753 agtagaattgattttacctcaaaaattaatgctgcttgaaactaggatctgtaacttttgaatctataattgaatttcacaaacaaatttatagttcaa 50569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 51500939 - 51500862
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 269
Target Start/End: Original strand, 4887718 - 4887837
Alignment:
Q  148 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaat 247  Q
    |||||| |||||||| |  |||||| |||| |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||| ||| |||| |||    
T  4887718 aagttaagatttgtaaccattgatt-tagaattgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaat 4887815  T
Q  248 cacttttacccaaaatcaattc 269  Q
     | ||||| |||||||||||||    
T  4887816 tatttttagccaaaatcaattc 4887837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 28287423 - 28287346
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| |||||||| ||||  || ||||| ||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 10325043 - 10324967
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||| ||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 3909827 - 3909918
Alignment:
Q  101 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||||||| |||| || | ||||||| | |||||| |||||  |||||||||||||| ||||  |||| ||| |||| ||||||||||||||    
T  3909827 ttgttgtcaagtataactcattttgctttcaaaatcgattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca 3909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 33733954 - 33734036
Alignment:
Q  120 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 202  Q
    |||||| || ||||||||||| || || ||||||| |||| || |||||||||| ||  |||||||| |||||||| ||||||    
T  33733954 attttgtcttcaaaattgattgtatttaaagttagaatttttaacttttgattcgagcattgatttttacacataaatttata 33734036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 163  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 8130853 - 8130910
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||||||||||| ||||| |||||||||||| |  | || |||||||||||    
T  8130853 tatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgatt 8130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 15478191 - 15478134
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||||||||| | ||||| ||||| |||||||| | ||| |||||||||||    
T  15478191 tatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgatt 15478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 15986326 - 15986237
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 204  Q
    |||| |||||||||||| |||||||| || |||||  ||||||||  |  |||| |||||||| ||||| |||||||| || ||||||||    
T  15986326 aattaattttgcctccagaattgattatagttgaaactaggatttcaagttttttattctagaattgatattcacacacaaatttatagt 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 34915088 - 34915149
Alignment:
Q  157 tttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||| |||||||||||||| |||||| | |||||  |||||||| |||||||| ||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcactttta 34915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 45660938 - 45660878
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 84  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||||||  ||||||||||||||    
T  45660938 tatgtttcgttccacttctggaggggccaaaattga-tttggaggtgaagaattgattctga 45660878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 47053385 - 47053438
Alignment:
Q  110 agtagaattgattttgcctccaaa----attgattctacttgaagttaggattt 159  Q
    |||||||||||||||||||||| |    |||||||||| |||||||||||||||    
T  47053385 agtagaattgattttgcctccagaattgattgattctatttgaagttaggattt 47053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 41386949 - 41386818
Alignment:
Q  86 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 185  Q
    |||| |||||| |||||| | || |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |    
T  41386949 ttctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatat 41386850  T
Q  186 tcacacataattttatagttcaactcgctttt 217  Q
    | ||||| || |||||| |||||||| |||||    
T  41386849 ttacacacaaatttataattcaactcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 40491558 - 40491661
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 214  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||| ||||| || |||| |||| ||||| ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T
Q  215 ttta 218  Q
    ||||    
T  40491658 ttta 40491661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 15903635 - 15903558
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||  | ||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacaca 15903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 27571818 - 27571918
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
    |||||| |||||| | || |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| |||||||| |||    
T  27571818 acatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaaca 27571917  T
Q  191 c 191  Q
    |    
T  27571918 c 27571918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 22195820 - 22195919
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 190  Q
    |||||| ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||||||    
T  22195820 acatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 35772221 - 35772331
Alignment:
Q  98 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 197  Q
    ||||||||||  | |||||||| || || |||||||||| ||||||||| || ||| ||||||||  |||||||| |||| |||||||||||| |||| |    
T  35772221 tgattgttgtagaatagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaat 35772320  T
Q  198 ttatagttcaa 208  Q
    ||||| |||||    
T  35772321 ttataattcaa 35772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 191
Target Start/End: Complemental strand, 28725160 - 28725081
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | |||||| ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 5489956 - 5489875
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | |||||||| ||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacac 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 167  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 170  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 30182404 - 30182325
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||| ||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||| ||||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 25156176 - 25156284
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtac----cttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    |||||||||| |||| |||||||||||  ||| ||||||| ||||||||     |||| |||||||| |||||||| |||||||| || |||  ||||||    
T  25156176 aattgatttttcctctaaaattgattcatcttaaagttagaatttgtacgtagttttttattctagaattgatttttacacataaattaataaatcaact 25156275  T
Q  211 cgcttttat 219  Q
    | |||||||    
T  25156276 cacttttat 25156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  112 tagaattgattttgcctccaaaattgattctacttgaag 150  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattct 174  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 38123753 - 38123668
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||||||||||||||| ||| | ||||| ||| | |||||||| |||||||| ||||  || ||||| | ||||||| ||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcactttta 38123668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 1410942 - 1411018
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||| |||||||||  | ||||||||||| |||||||||  |||||||  ||||| || |||| |||||||||||||    
T  1410942 aattaattttgcctttagaattgattctatttgaagttataatttgtagattttgtttttagaattgattttcacac 1411018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 22198194 - 22198234
Alignment:
Q  236 tttagtcagaatcacttttacccaaaatcaattctccccac 276  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  22198194 tttagtcagaattacttttaaccaaaatcaattcttcccac 22198234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 22239627 - 22239587
Alignment:
Q  236 tttagtcagaatcacttttacccaaaatcaattctccccac 276  Q
    |||||||||||| ||||||| |||||||||||||| |||||    
T  22239627 tttagtcagaattacttttaaccaaaatcaattcttcccac 22239587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 25359763 - 25359602
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 122  Q
    ||||||||||||||||| |||||   ||| |||||||| ||||||| |||||||| ||||       | ||||| || ||| |||| | || ||||||||    
T  25359763 tatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttct-------accatgtttggttgctgtcaaata-aattgatt 25359672  T
Q  123 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 192  Q
     |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||||||||    
T  25359671 ctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacaca 25359602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 208
Target Start/End: Complemental strand, 40736659 - 40736550
Alignment:
Q  98 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 197  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  |||||||||||||| || ||||||||||| || |    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga-ttaattttcacacacaaat 40736561  T
Q  198 ttatagttcaa 208  Q
    ||||| |||||    
T  40736560 ttataattcaa 40736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 54596774 - 54596872
Alignment:
Q  91 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 189  Q
    |||||| || ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| |||||||||||    
T  54596774 acatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgattttcac 54596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  21 tatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 84  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 32523451 - 32523349
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||| ||||| || |||| |||| ||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaa 32523352  T
Q  209 ctc 211  Q
    |||    
T  32523351 ctc 32523349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 52364049 - 52364134
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||| |||||||||||| || ||||| || |||||||||||| | |||||||||| |||||| |||| |||||||||| ||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcactttta 52364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 174  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 35058336 - 35058446
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac-ataattttatagttcaa 208  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| |||||||| ||||   ||| |||| ||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaa 35058435  T
Q  209 ctcgcttttat 219  Q
    ||| |||||||    
T  35058436 ctcacttttat 35058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 37335139 - 37335063
Alignment:
Q  115 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||| ||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacac 37335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 44771670 - 44771770
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 210  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||| |||||| | |||  |||||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacacattaatttgaagttcaact 44771769  T
Q  211 c 211  Q
    |    
T  44771770 c 44771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 177  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 35264518 - 35264423
Alignment:
Q  113 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| |||||||| |||| ||| ||||| ||||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaa 35264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 52363955 - 52364017
Alignment:
Q  18 atgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    |||| ||||||||||||||||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363955 atgtgtatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    ||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 218
Target Start/End: Original strand, 36302158 - 36302266
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 209  Q
    ||||||||||||||||||| || | ||||||||| |||||| |||   ||| |  |||||||| |||| ||||||||  ||| ||| ||||| |||||||    
T  36302158 agtagaattgattttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaac 36302257  T
Q  210 tcgctttta 218  Q
    || ||||||    
T  36302258 tcactttta 36302266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 48410939 - 48410891
Alignment:
Q  93 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattc 141  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||    
T  48410939 atgtttgattgctttcgagtagaattgattttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  111 gtagaattgattttgcctccaaaattgattctacttgaag 150  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 35058065 - 35058120
Alignment:
Q  133 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 188  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattttca 35058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 169  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 31708303 - 31708241
Alignment:
Q  156 atttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    ||||||| |||||||||||||| |||||| | ||||| || |||||| |||||||| ||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcactttta 31708241  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 40147950 - 40147852
Alignment:
Q  120 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 218  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||  |||| | | |||||  |||||||| ||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcactttta 40147852  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 47356355 - 47356257
Alignment:
Q  110 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 208  Q
    |||| ||||||||||| ||  | ||| ||||| ||||||||||| ||||| ||   ||||||| |||| |||||||| |||||||| |||| |||||||    
T  47356355 agtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaa 47356257  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  110 agtagaattgatttt-gcctccaaaattgattctacttgaag 150  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Complemental strand, 44958712 - 44958635
Alignment:
Q  114 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 191  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  ||||||| ||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacac 44958635  T

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Target: scaffold0314 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  24 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 80  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

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Target: scaffold0197 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  23 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 84  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 23699 - 23627
Alignment:
Q  114 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 186  Q
    |||||||||||| ||||| || | ||||||  ||||| ||||||||||| ||||||| ||||||  |||||||    
T  23699 gaattgattttgtctccataaataattctaactgaagctaggatttgtagcttttgaatctagacgtgatttt 23627  T

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