View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_high_33 (Length: 203)

Name: NF16244_high_33
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_high_33
NF16244_high_33
[»] chr4 (10 HSPs)
chr4 (1-203)||(48205842-48206047)
chr4 (1-202)||(26984559-26984763)
chr4 (1-106)||(26998731-26998836)
chr4 (1-102)||(50077194-50077295)
chr4 (1-102)||(49106524-49106625)
chr4 (1-170)||(11652319-11652488)
chr4 (1-102)||(49108628-49108729)
chr4 (1-102)||(3461137-3461238)
chr4 (1-103)||(41013542-41013642)
chr4 (18-102)||(21503706-21503790)
[»] chr1 (19 HSPs)
chr1 (1-169)||(14654268-14654436)
chr1 (1-169)||(14664059-14664227)
chr1 (1-169)||(14683761-14683929)
chr1 (1-102)||(14674492-14674593)
chr1 (1-102)||(14679870-14679971)
chr1 (1-169)||(14669637-14669805)
chr1 (1-169)||(14716302-14716470)
chr1 (1-127)||(14708589-14708715)
chr1 (1-102)||(14681610-14681711)
chr1 (1-102)||(14706099-14706200)
chr1 (1-102)||(14652536-14652637)
chr1 (1-102)||(14662327-14662428)
chr1 (1-96)||(14667112-14667207)
chr1 (1-102)||(38175525-38175626)
chr1 (1-85)||(14676643-14676727)
chr1 (1-102)||(33988081-33988182)
chr1 (1-97)||(11872481-11872577)
chr1 (1-102)||(28366193-28366295)
chr1 (1-63)||(37422180-37422242)
[»] chr2 (22 HSPs)
chr2 (1-102)||(30733999-30734100)
chr2 (1-102)||(30732019-30732120)
chr2 (1-102)||(32918091-32918192)
chr2 (1-102)||(2841012-2841113)
chr2 (1-102)||(43850060-43850161)
chr2 (1-102)||(9008032-9008134)
chr2 (1-102)||(19232395-19232495)
chr2 (1-97)||(10763878-10763974)
chr2 (1-102)||(9020858-9020960)
chr2 (1-100)||(9026797-9026897)
chr2 (1-63)||(9032064-9032126)
chr2 (1-102)||(8973323-8973425)
chr2 (1-57)||(8979333-8979389)
chr2 (1-57)||(9023458-9023514)
chr2 (3-102)||(9030411-9030510)
chr2 (6-102)||(8992164-8992261)
chr2 (5-97)||(6471709-6471800)
chr2 (1-57)||(8984704-8984760)
chr2 (5-102)||(9016508-9016609)
chr2 (3-57)||(8988468-8988522)
chr2 (18-101)||(17225659-17225743)
chr2 (7-63)||(35701906-35701962)
[»] chr8 (11 HSPs)
chr8 (1-102)||(40054323-40054424)
chr8 (1-102)||(44878994-44879095)
chr8 (1-102)||(44880826-44880927)
chr8 (1-99)||(41841150-41841248)
chr8 (5-99)||(10944397-10944491)
chr8 (7-106)||(44582870-44582969)
chr8 (1-127)||(37682068-37682194)
chr8 (1-102)||(37679766-37679867)
chr8 (1-63)||(42220880-42220941)
chr8 (6-63)||(42555117-42555174)
chr8 (12-63)||(42092042-42092093)
[»] chr6 (7 HSPs)
chr6 (1-102)||(10791647-10791748)
chr6 (1-102)||(10795885-10795986)
chr6 (2-105)||(8875701-8875806)
chr6 (5-115)||(30521257-30521367)
chr6 (33-102)||(11333273-11333342)
chr6 (43-100)||(13136607-13136664)
chr6 (6-96)||(21216041-21216131)
[»] chr5 (6 HSPs)
chr5 (1-102)||(3643651-3643752)
chr5 (1-102)||(7524979-7525080)
chr5 (1-102)||(1716446-1716548)
chr5 (7-106)||(4103262-4103361)
chr5 (29-127)||(5350678-5350776)
chr5 (4-61)||(19261152-19261209)
[»] chr7 (1 HSPs)
chr7 (1-102)||(27134522-27134623)
[»] scaffold0549 (1 HSPs)
scaffold0549 (41-101)||(5447-5507)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 5e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 48205842 - 48206047
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||| |||||||| |||| || ||||||||||||| | |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  48205842 tcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaattacttttttgag 48205941  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcatgag---cgcatcccaccaatttagttcaaag 197  Q
    ||| |||||||||||||||||||||||| ||| |||||||||||| ||||||   |||||||||||||||||    ||||||||||||||||||||||||    
T  48205942 ggaaagtgtacactaaagtagcttgctgcttggactctcgagtgttgcccatacattgcactatagcatgagtgttgcatcccaccaatttagttcaaag 48206041  T
Q  198 tttttg 203  Q
    ||||||    
T  48206042 tttttg 48206047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 26984763 - 26984559
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||  ||    
T  26984763 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttaaag 26984664  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcatg----agcgcatcccaccaatttagttcaaa 196  Q
    |||||| || |     |||||||||||| |||  ||||| |||||||||  || |||||||||| |||||     |||||||||||||||| |||||||     
T  26984663 ggagagagt-ctgcctagtagcttgctgcttgggctctcaagtgtcgcctttgcgttgcactattgcatgggctggcgcatcccaccaattcagttcaat 26984565  T
Q  197 gttttt 202  Q
    ||||||    
T  26984564 gttttt 26984559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26998836 - 26998731
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||| ||    
T  26998836 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttttag 26998737  T
Q  101 ggagag 106  Q
    ||||||    
T  26998736 ggagag 26998731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 50077295 - 50077194
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||||||||    
T  50077295 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattacttttttgag 50077196  T
Q  101 gg 102  Q
    ||    
T  50077195 gg 50077194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49106625 - 49106524
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | ||||||||||||||||||||||    
T  49106625 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgag 49106526  T
Q  101 gg 102  Q
    ||    
T  49106525 gg 49106524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 11652488 - 11652319
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||||||||| |||||||||    
T  11652488 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgag 11652389  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaac-tctcgagtgtcgcccatgtgttgcactatagcatg 170  Q
    || |||    ||||  | ||||||||| ||||  | ||| |||||||||| |||||||||||||| |||||    
T  11652388 ggggagaagccactccaatagcttgct-attgggcttcttgagtgtcgcctatgtgttgcactattgcatg 11652319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49108729 - 49108628
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   || ||| ||| | ||||||||||||||||||||||    
T  49108729 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttgag 49108630  T
Q  101 gg 102  Q
    ||    
T  49108629 gg 49108628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 3461238 - 3461137
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   || ||| ||| | ||||||||||||||||||| ||    
T  3461238 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttaag 3461139  T
Q  101 gg 102  Q
    ||    
T  3461138 gg 3461137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 41013642 - 41013542
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||| |||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||  |||||| ||| ||||||||||  ||||||||    
T  41013642 tcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaatta--tttttgag 41013545  T
Q  101 gga 103  Q
    |||    
T  41013544 gga 41013542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 21503706 - 21503790
Alignment:
Q  18 atcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgaggg 102  Q
    ||||||| || |||||||||||||||||||||||||||||||||||  || | | ||| | |||||||||||| |||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggg 21503790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14654436 - 14654268
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14654436 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14654337  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcat 169  Q
    || ||| |  ||||  |||||||||||    |  |||||| |||||||| || ||||||||||||||||    
T  14654336 ggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcat 14654268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14664227 - 14664059
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14664227 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14664128  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcat 169  Q
    || ||| |  ||||  |||||||||||    |  |||||| |||||||| || ||||||||||||||||    
T  14664127 ggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcat 14664059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 14683761 - 14683929
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14683761 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14683860  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcat 169  Q
    || ||| |   |||  |||||||||||  | |  |||||| ||||| || |||||||||||||||||||    
T  14683861 ggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcat 14683929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14674492 - 14674593
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14674492 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgag 14674591  T
Q  101 gg 102  Q
    ||    
T  14674592 gg 14674593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14679870 - 14679971
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14679870 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgag 14679969  T
Q  101 gg 102  Q
    ||    
T  14679970 gg 14679971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 14669805 - 14669637
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14669805 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14669706  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcat 169  Q
    || ||| |   |||  |||||||||||  |    |||| | |||||||| |||||||||||||||||||    
T  14669705 ggggagaggcaactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcat 14669637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 14716302 - 14716470
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||    
T  14716302 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgag 14716401  T
Q  101 ggagagtgtacactaaagtagcttgctgattgaactctcgagtgtcgcccatgtgttgcactatagcat 169  Q
    || ||| |   |||  |||||||||||  |    |||||| |||||||| |||||||||||||||||||    
T  14716402 ggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcat 14716470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 14708589 - 14708715
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14708589 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14708688  T
Q  101 ggagagtgtacactaaagtagcttgct 127  Q
    || ||| |  ||||  |||||||||||    
T  14708689 ggggagaggtcactttagtagcttgct 14708715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14681610 - 14681711
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14681610 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14681709  T
Q  101 gg 102  Q
    ||    
T  14681710 gg 14681711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14706099 - 14706200
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||    
T  14706099 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgag 14706198  T
Q  101 gg 102  Q
    ||    
T  14706199 gg 14706200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14652536 - 14652637
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||    
T  14652536 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 14652635  T
Q  101 gg 102  Q
    ||    
T  14652636 gg 14652637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14662327 - 14662428
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||    
T  14662327 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 14662426  T
Q  101 gg 102  Q
    ||    
T  14662427 gg 14662428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14667207 - 14667112
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttt 96  Q
    |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  14667207 tcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaattacttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38175626 - 38175525
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||||||||    
T  38175626 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaattacttttttgag 38175527  T
Q  101 gg 102  Q
    ||    
T  38175526 gg 38175525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14676643 - 14676727
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatatta 85  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  14676643 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 33988081 - 33988182
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||  ||| | ||||||||||||||||||| ||    
T  33988081 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttttaag 33988180  T
Q  101 gg 102  Q
    ||    
T  33988181 gg 33988182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 11872577 - 11872481
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattactttttt 97  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||  || ||| ||| | |||||||||||||||||||    
T  11872577 tcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattactttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28366295 - 28366193
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtg-gaccattggttcatatgatattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   ||| ||| ||| | ||||||||||||||||||| |    
T  28366295 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaattacttttttaa 28366196  T
Q  100 ggg 102  Q
    |||    
T  28366195 ggg 28366193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37422180 - 37422242
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    |||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||    
T  37422180 tcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtgg 37422242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30733999 - 30734100
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||    
T  30733999 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattactttttttag 30734098  T
Q  101 gg 102  Q
    ||    
T  30734099 gg 30734100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 30732019 - 30732120
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||    
T  30732019 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgag 30732118  T
Q  101 gg 102  Q
    ||    
T  30732119 gg 30732120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 32918091 - 32918192
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||    
T  32918091 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 32918190  T
Q  101 gg 102  Q
    ||    
T  32918191 gg 32918192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2841113 - 2841012
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| | ||||||||||||||||||||||    
T  2841113 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttgag 2841014  T
Q  101 gg 102  Q
    ||    
T  2841013 gg 2841012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 43850060 - 43850161
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||  ||| |||||||||||| |||||||||||    
T  43850060 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatcacttttttgag 43850159  T
Q  101 gg 102  Q
    ||    
T  43850160 gg 43850161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9008032 - 9008134
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatga-tattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||| ||| ||| |||||  | |||||||||||||||||||    
T  9008032 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtattaaattacttttttga 9008131  T
Q  100 ggg 102  Q
    |||    
T  9008132 ggg 9008134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 19232495 - 19232395
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||  ||||||| ||| |  |||||||||||| ||||||||    
T  19232495 tcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattacctttttgag 19232397  T
Q  101 gg 102  Q
    ||    
T  19232396 gg 19232395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10763974 - 10763878
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattactttttt 97  Q
    |||| |||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||||||||||    
T  10763974 tcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattactttttt 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9020858 - 9020960
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||||| ||| ||| ||| ||   |||||||||||||||||||    
T  9020858 tcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttga 9020957  T
Q  100 ggg 102  Q
    |||    
T  9020958 ggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 9026797 - 9026897
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatga-tattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||  |||| ||| ||| ||| |  | |||||||||||||||||||    
T  9026797 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttga 9026896  T
Q  100 g 100  Q
    |    
T  9026897 g 9026897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9032064 - 9032126
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  9032064 tcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8973323 - 8973425
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||  |||| ||| ||| |||  |  |||||||||||||||||| |    
T  8973323 tcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaattacttttttaa 8973422  T
Q  100 ggg 102  Q
    |||    
T  8973423 ggg 8973425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8979333 - 8979389
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 57  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  8979333 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9023458 - 9023514
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 57  Q
    |||||||||||||||||||||||| || ||||||||||||| |||||||||||||||    
T  9023458 tcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 9030411 - 9030510
Alignment:
Q  3 ggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgaggg 102  Q
    |||||||||||||||||||||| || ||||||||||||||| |||||||| ||| | ||||  || ||| ||| |   ||||||||||||||||||||||    
T  9030411 ggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaattacttttttgaggg 9030510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 8992164 - 8992261
Alignment:
Q  6 cttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttca-tatgatattaaattacttttttgaggg 102  Q
    ||||||||||||||||||| || ||| ||||||||| |||| ||||||||||  |||| ||| ||| |||  || |||||||||||||||||||||||    
T  8992164 cttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattacttttttgaggg 8992261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 6471800 - 6471709
Alignment:
Q  5 ccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattactttttt 97  Q
    ||||||||||||||| |||| || ||| ||||||||| |||||||||||||||||  || | | ||| ||| |||||||||| ||||||||||    
T  6471800 ccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttactttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8984704 - 8984760
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 57  Q
    |||||||||||||||||||||||| || ||| ||||||||| |||||||||| ||||    
T  8984704 tcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 9016508 - 9016609
Alignment:
Q  5 ccttttggctaagatcaagtatactatctgttcttatc---agtttaatatctgatatgtggaccattggttcatatga-tattaaattacttttttgag 100  Q
    |||||||||||||||||| | || ||||||||||||||   |||||||||||||||  |||| ||| ||| ||| |  | ||||||||||||||||||||    
T  9016508 ccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgag 9016607  T
Q  101 gg 102  Q
    ||    
T  9016608 gg 9016609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 8988468 - 8988522
Alignment:
Q  3 ggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgat 57  Q
    ||||||||||| |||||||||| || ||| |||||||||||||||||||| ||||    
T  8988468 ggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  18 atcaagtatactatctgttctt-atcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagg 101  Q
    ||||||| || |||||||| || ||| |||||||| ||||||| ||| ||| ||  ||||| |||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 35701906 - 35701962
Alignment:
Q  7 ttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    |||||||||||||||||| |  ||| |||| |||| |||||||||| ||||||||||    
T  35701906 ttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgg 35701962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40054323 - 40054424
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||||||    
T  40054323 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaattacttttttgag 40054422  T
Q  101 gg 102  Q
    ||    
T  40054423 gg 40054424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 44878994 - 44879095
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| ||||||||||||||||||||||||    
T  44878994 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgag 44879093  T
Q  101 gg 102  Q
    ||    
T  44879094 gg 44879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44880927 - 44880826
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||  || ||| ||| ||||||||||||||||||||||||    
T  44880927 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgag 44880828  T
Q  101 gg 102  Q
    ||    
T  44880827 gg 44880826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41841248 - 41841150
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| ||| | |||||||||||||||||||||    
T  41841248 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttttga 41841150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 10944491 - 10944397
Alignment:
Q  5 ccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttga 99  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| | ||||||| | |||||||||||||||||||||    
T  10944491 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaattacttttttga 10944397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 44582870 - 44582969
Alignment:
Q  7 ttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagag 106  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |  || ||| |  |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgagggagag 44582969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 37682068 - 37682194
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| || | |||||||||||  |||||| ||    
T  37682068 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgtttttttag 37682167  T
Q  101 ggagagtgtacactaaagtagcttgct 127  Q
    |  ||| || ||| ||| |||||||||    
T  37682168 gatgagagtccaccaaaatagcttgct 37682194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 37679766 - 37679867
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| ||  ||||||||||||  ||| |||||    
T  37679766 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaatttatttattgag 37679865  T
Q  101 gg 102  Q
    ||    
T  37679866 gg 37679867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42220941 - 42220880
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    |||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||||||||||    
T  42220941 tcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 42555174 - 42555117
Alignment:
Q  6 cttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    |||||||||||||||||||  |  ||||||| ||||||||||||||| ||||||||||    
T  42555174 cttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtgg 42555117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 42092042 - 42092093
Alignment:
Q  12 gctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtgg 63  Q
    ||||| || |||| || ||| |||||||||||||||||||||||||||||||    
T  42092042 gctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10791748 - 10791647
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| ||||||||||||||||||||||||    
T  10791748 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattacttttttgag 10791649  T
Q  101 gg 102  Q
    ||    
T  10791648 gg 10791647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10795986 - 10795885
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||||||||    
T  10795986 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattacttttttgag 10795887  T
Q  101 gg 102  Q
    ||    
T  10795886 gg 10795885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 8875701 - 8875806
Alignment:
Q  2 cggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaat--tacttttttga 99  Q
    ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| | | | | | ||||||||||  |||||||||||    
T  8875701 cggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattatacttttttga 8875800  T
Q  100 gggaga 105  Q
    ||||||    
T  8875801 gggaga 8875806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 30521257 - 30521367
Alignment:
Q  5 ccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggag 104  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |  ||| | |||||| ||||  ||||||||||| |    
T  30521257 ccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatttattttttgaggggg 30521356  T
Q  105 agtgtacacta 115  Q
    || || |||||    
T  30521357 agagtccacta 30521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 11333273 - 11333342
Alignment:
Q  33 tgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgaggg 102  Q
    ||||||||||||||||||||||||||||||| |||  || ||| | ||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggg 11333342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 13136607 - 13136664
Alignment:
Q  43 agtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    ||||||||||||||||||||||||| |||| || | ||||||||||||||||||||||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgag 13136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 21216041 - 21216131
Alignment:
Q  6 cttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttt 96  Q
    |||||| ||||||||| |||||  |||| |||||||||||||||||||| ||||||||  || ||  ||| |  |||||||||||||||||    
T  21216041 cttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3643651 - 3643752
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||||||||||||| ||    
T  3643651 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaattacttttttaag 3643750  T
Q  101 gg 102  Q
    ||    
T  3643751 gg 3643752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7524979 - 7525080
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||| ||| ||| | ||||||||||||||||||||||    
T  7524979 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattacttttttgag 7525078  T
Q  101 gg 102  Q
    ||    
T  7525079 gg 7525080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1716548 - 1716446
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggacc-attggttcatatgatattaaattacttttttga 99  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || | ||| ||| | ||||||||||||||||||| |    
T  1716548 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattacttttttaa 1716449  T
Q  100 ggg 102  Q
    |||    
T  1716448 ggg 1716446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 4103262 - 4103361
Alignment:
Q  7 ttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagag 106  Q
    |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||| | || || | ||||||||||| ||||||| ||||||||    
T  4103262 ttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctttttttagggagag 4103361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 5350678 - 5350776
Alignment:
Q  29 tatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagggagagtgtacactaaagtagcttgct 127  Q
    ||||| || ||||||||||||||||||||||||||  || |||| || | |||||||||||  ||| |||||||  || || ||| |||||||||||||    
T  5350678 tatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagcttgct 5350776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 19261209 - 19261152
Alignment:
Q  4 gccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgt 61  Q
    ||||||||  ||||||||||| || ||| |||||||||| ||| ||||||||||||||    
T  19261209 gccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 27134522 - 27134623
Alignment:
Q  1 tcggccttttggctaagatcaagtatactatctgttcttatcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgag 100  Q
    ||||||||||  |||||||||| | || |||||||||||||  |||||||||||||||||||| | | ||  ||| | ||||||||||||||||||||||    
T  27134522 tcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaattacttttttgag 27134621  T
Q  101 gg 102  Q
    ||    
T  27134622 gg 27134623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 5447 - 5507
Alignment:
Q  41 tcagtttaatatctgatatgtggaccattggttcatatgatattaaattacttttttgagg 101  Q
    ||||||||||||||||||| ||| ||| | ||||| | |||||||||||  ||||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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