View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_high_8 (Length: 448)
Name: NF16244_high_8
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 40219462 - 40219051
Alignment:
| Q |
11 |
cacagacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtcctatcgagaggctcgccgatagtggtaagaaagcaatatattgtaatt |
110 |
Q |
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| T |
40219462 |
cacagacacctttgatgaaatatgtctttgccagatatcatcaaccatagtcctatcgagaggctcaccggtagtggtaagaaagtaatatattgtaatt |
40219363 |
T |
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| Q |
111 |
atattaatcagtctaatcttttgacttctnnnnnnnnnnnnnnnnnntctaatctttagatacaatatgaagctgttgagaacttgacacaccaacaaaa |
210 |
Q |
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| T |
40219362 |
atattaatcagtctaatctttagacttctcaaaaaaaaaaaaaaa--tctaatctttagatacaatatgaagctgttgagaacttgacacaccaacaaaa |
40219265 |
T |
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| Q |
211 |
acaatatcaattgtgaaaacagattaaagcatgcatgttagagatgaaattaccataatctttgcgtggcaatggtgattaacccctattttcttgtttg |
310 |
Q |
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| T |
40219264 |
acaatatcaattgtgaaaacagattaaagcatgcatgttagagatgaaattaccataatctttgtgtggcaatcgtgattaacccctattttcttgtttg |
40219165 |
T |
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| Q |
311 |
gttatcaactcaactctatggatgatttctacaacttttcatacgatttagtcttttcacgactttggcttgtagagaataatggtttaatatttgggat |
410 |
Q |
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| T |
40219164 |
gttatcaactcaactctatggatgatttctacaacttttcatacgatttagtcttttcacgactttggcttgtagagaataatggttttatatttgggat |
40219065 |
T |
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| Q |
411 |
aaatggaacggagg |
424 |
Q |
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| T |
40219064 |
aaatggaacggagg |
40219051 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 37108492 - 37108545
Alignment:
| Q |
14 |
agacacctttgatgaaatatgcctttgtcagatatcatcaaccatagtcctatc |
67 |
Q |
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| T |
37108492 |
agacacctttgacggaatatgcttttgccagacatcatcaaccagagtcctatc |
37108545 |
T |
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