View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_low_1 (Length: 716)

Name: NF16244_low_1
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_low_1
NF16244_low_1
[»] chr4 (37 HSPs)
chr4 (9-699)||(50061567-50062256)
chr4 (527-627)||(32818380-32818480)
chr4 (444-619)||(35064962-35065130)
chr4 (503-635)||(9064182-9064314)
chr4 (508-628)||(49138772-49138891)
chr4 (527-628)||(26617443-26617544)
chr4 (441-679)||(21691160-21691409)
chr4 (529-611)||(55186988-55187070)
chr4 (441-635)||(16551853-16552038)
chr4 (550-622)||(8604637-8604709)
chr4 (508-628)||(53913586-53913706)
chr4 (527-625)||(30472909-30473007)
chr4 (448-591)||(46344878-46345013)
chr4 (518-609)||(9134576-9134667)
chr4 (518-685)||(39733582-39733756)
chr4 (518-635)||(39386599-39386716)
chr4 (440-579)||(49138894-49139025)
chr4 (554-635)||(52965856-52965937)
chr4 (529-628)||(41370021-41370118)
chr4 (503-619)||(43868087-43868203)
chr4 (534-592)||(11271582-11271641)
chr4 (527-584)||(25319022-25319080)
chr4 (529-603)||(30889764-30889838)
chr4 (527-603)||(18597014-18597091)
chr4 (527-624)||(20712827-20712924)
chr4 (440-497)||(33456269-33456326)
chr4 (440-501)||(33843586-33843647)
chr4 (571-636)||(45011893-45011958)
chr4 (550-622)||(30357510-30357582)
chr4 (535-567)||(33843661-33843693)
chr4 (636-687)||(9134708-9134759)
chr4 (532-603)||(25927288-25927359)
chr4 (522-628)||(31012747-31012854)
chr4 (530-603)||(2206377-2206451)
chr4 (527-635)||(22683838-22683947)
chr4 (518-635)||(53713563-53713680)
chr4 (436-477)||(56013913-56013954)
[»] chr8 (24 HSPs)
chr8 (9-699)||(44140988-44141679)
chr8 (465-635)||(13384656-13384819)
chr8 (524-635)||(32927864-32927975)
chr8 (518-628)||(38868464-38868574)
chr8 (529-634)||(4662906-4663011)
chr8 (518-635)||(37684371-37684488)
chr8 (538-608)||(38537387-38537457)
chr8 (527-610)||(36200159-36200242)
chr8 (503-609)||(26668503-26668609)
chr8 (529-591)||(41318825-41318887)
chr8 (550-635)||(26100148-26100233)
chr8 (550-628)||(15677824-15677903)
chr8 (552-627)||(35494990-35495065)
chr8 (530-603)||(10367973-10368046)
chr8 (440-499)||(10367896-10367955)
chr8 (550-619)||(7244619-7244688)
chr8 (527-635)||(16972066-16972174)
chr8 (503-567)||(35525363-35525427)
chr8 (503-622)||(463128-463247)
chr8 (550-621)||(32994258-32994329)
chr8 (440-519)||(35494916-35494995)
chr8 (550-635)||(18355852-18355935)
chr8 (535-587)||(1836262-1836315)
chr8 (640-689)||(29512900-29512949)
[»] scaffold0168 (1 HSPs)
scaffold0168 (440-607)||(31721-31881)
[»] chr6 (24 HSPs)
chr6 (440-687)||(4910803-4911053)
chr6 (452-627)||(3481946-3482121)
chr6 (434-609)||(5724658-5724826)
chr6 (527-625)||(6654102-6654200)
chr6 (444-635)||(25195368-25195550)
chr6 (537-621)||(7952725-7952809)
chr6 (527-635)||(16540082-16540190)
chr6 (527-635)||(1485148-1485256)
chr6 (550-609)||(6895978-6896037)
chr6 (528-635)||(26280581-26280688)
chr6 (527-601)||(765422-765496)
chr6 (527-608)||(2234490-2234571)
chr6 (631-685)||(4908051-4908105)
chr6 (532-608)||(852512-852588)
chr6 (470-572)||(2008403-2008498)
chr6 (527-603)||(10400729-10400805)
chr6 (529-560)||(24974192-24974223)
chr6 (529-635)||(434239-434345)
chr6 (550-628)||(25195848-25195926)
chr6 (529-635)||(34620863-34620969)
chr6 (529-635)||(34748300-34748406)
chr6 (529-567)||(35098244-35098282)
chr6 (531-587)||(10564974-10565031)
chr6 (575-628)||(17225875-17225928)
[»] chr2 (23 HSPs)
chr2 (521-687)||(33019096-33019272)
chr2 (440-610)||(30503104-30503267)
chr2 (527-636)||(10644578-10644687)
chr2 (505-635)||(11504064-11504193)
chr2 (440-499)||(33047683-33047742)
chr2 (527-609)||(2002723-2002805)
chr2 (527-633)||(31453358-31453464)
chr2 (543-608)||(42740968-42741033)
chr2 (531-635)||(16518758-16518861)
chr2 (522-628)||(22535968-22536074)
chr2 (518-627)||(3352042-3352151)
chr2 (533-635)||(42982523-42982627)
chr2 (528-635)||(33502223-33502320)
chr2 (503-628)||(12037012-12037137)
chr2 (550-635)||(26032037-26032122)
chr2 (550-614)||(43501123-43501187)
chr2 (527-562)||(1976940-1976975)
chr2 (529-567)||(680347-680385)
chr2 (528-570)||(32777946-32777988)
chr2 (555-628)||(5533040-5533113)
chr2 (440-497)||(7629757-7629814)
chr2 (526-603)||(21659693-21659770)
chr2 (527-587)||(37561681-37561742)
[»] chr5 (26 HSPs)
chr5 (529-687)||(42858085-42858253)
chr5 (444-609)||(11647981-11648139)
chr5 (532-623)||(14299310-14299401)
chr5 (535-636)||(9818717-9818819)
chr5 (550-635)||(6951307-6951392)
chr5 (545-634)||(38845436-38845525)
chr5 (440-685)||(18851024-18851272)
chr5 (518-636)||(28110439-28110557)
chr5 (440-497)||(38845644-38845701)
chr5 (503-579)||(27374349-27374425)
chr5 (529-635)||(42439619-42439726)
chr5 (527-609)||(34250379-34250461)
chr5 (518-628)||(36290001-36290111)
chr5 (532-628)||(13171769-13171866)
chr5 (440-623)||(22226250-22226426)
chr5 (527-608)||(36639912-36639993)
chr5 (550-626)||(39097244-39097320)
chr5 (528-580)||(43268467-43268519)
chr5 (532-635)||(31906239-31906342)
chr5 (508-628)||(5468729-5468850)
chr5 (550-628)||(18637282-18637358)
chr5 (527-603)||(1105414-1105492)
chr5 (440-497)||(3043137-3043194)
chr5 (535-564)||(22572511-22572540)
chr5 (508-557)||(29922582-29922631)
chr5 (527-592)||(32980519-32980583)
[»] chr1 (32 HSPs)
chr1 (440-635)||(28083890-28084078)
chr1 (553-687)||(30557505-30557647)
chr1 (527-635)||(6021779-6021887)
chr1 (559-635)||(7524120-7524196)
chr1 (528-635)||(38797631-38797738)
chr1 (529-635)||(3016140-3016245)
chr1 (554-635)||(11049252-11049333)
chr1 (526-628)||(1514317-1514419)
chr1 (528-603)||(31362239-31362310)
chr1 (441-689)||(2099625-2099873)
chr1 (550-635)||(7790644-7790729)
chr1 (436-614)||(36780139-36780311)
chr1 (518-635)||(47321909-47322025)
chr1 (539-603)||(48549046-48549110)
chr1 (510-628)||(3416038-3416156)
chr1 (518-620)||(34387710-34387812)
chr1 (532-646)||(50571264-50571377)
chr1 (508-623)||(34721854-34721966)
chr1 (553-635)||(30850401-30850483)
chr1 (527-625)||(50569655-50569753)
chr1 (527-609)||(51500862-51500939)
chr1 (565-686)||(4887718-4887837)
chr1 (550-627)||(28287346-28287423)
chr1 (532-608)||(10324967-10325043)
chr1 (518-609)||(3909827-3909918)
chr1 (435-497)||(15478134-15478196)
chr1 (537-619)||(33733954-33734036)
chr1 (528-580)||(5268194-5268247)
chr1 (440-497)||(8130853-8130910)
chr1 (532-621)||(15986237-15986326)
chr1 (574-635)||(34915088-34915149)
chr1 (440-501)||(45660878-45660938)
[»] chr7 (17 HSPs)
chr7 (503-634)||(41386818-41386949)
chr7 (532-635)||(40491558-40491661)
chr7 (532-609)||(15903558-15903635)
chr7 (508-608)||(27571818-27571918)
chr7 (508-607)||(22195820-22195919)
chr7 (515-625)||(35772221-35772331)
chr7 (529-608)||(28725081-28725160)
chr7 (527-608)||(5489875-5489956)
chr7 (527-584)||(36270955-36271012)
chr7 (527-587)||(40422767-40422828)
chr7 (527-603)||(44856843-44856917)
chr7 (528-608)||(30182325-30182404)
chr7 (440-497)||(46325570-46325627)
chr7 (532-636)||(25156176-25156284)
chr7 (529-567)||(45004997-45005035)
chr7 (550-591)||(17111855-17111896)
chr7 (550-635)||(38123668-38123753)
[»] chr3 (25 HSPs)
chr3 (440-609)||(25359602-25359763)
chr3 (515-625)||(40736550-40736659)
chr3 (508-606)||(54596774-54596872)
chr3 (438-501)||(52141374-52141437)
chr3 (527-628)||(32523349-32523451)
chr3 (440-497)||(1290676-1290733)
chr3 (550-635)||(52364049-52364134)
chr3 (527-591)||(7717367-7717431)
chr3 (527-636)||(35058336-35058446)
chr3 (532-608)||(37335063-37335139)
chr3 (528-628)||(44771670-44771770)
chr3 (527-594)||(1441424-1441491)
chr3 (530-625)||(35264423-35264518)
chr3 (440-497)||(3845245-3845302)
chr3 (440-497)||(52363960-52364017)
chr3 (527-635)||(36302158-36302266)
chr3 (510-558)||(48410891-48410939)
chr3 (528-567)||(30301069-30301108)
chr3 (550-605)||(35058065-35058120)
chr3 (527-586)||(41115413-41115472)
chr3 (573-635)||(31708241-31708303)
chr3 (537-635)||(40147852-40147950)
chr3 (527-625)||(47356257-47356355)
chr3 (527-567)||(38022410-38022451)
chr3 (531-608)||(44958635-44958712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (441-497)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (440-501)||(31544-31605)


Alignment Details
Target: chr4 (Bit Score: 611; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 9 - 699
Target Start/End: Complemental strand, 50062256 - 50061567
Alignment:
Q  9 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50062256 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 50062157  T
Q  109 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnntcaagaaaggccaagctaaatgagctc 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  50062156 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctc 50062057  T
Q  209 agattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatacta 308  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  50062056 agattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatacta 50061957  T
Q  309 atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061956 atttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaattttac 50061857  T
Q  409 ccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaa 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50061856 ccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaa 50061757  T
Q  509 catgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  50061756 catgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacac 50061657  T
Q  609 ataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaact 699  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  50061656 ataattttatggttcaactcgcttttatccaaacacaattca-ctttagtcagaatcacttttaaccaaaatcaattctccccactgaact 50061567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 527 - 627
Target Start/End: Complemental strand, 32818480 - 32818380
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||  |||| || |||||||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaac 32818381  T
Q  627 t 627  Q
    |    
T  32818380 t 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 444 - 619
Target Start/End: Original strand, 35064962 - 35065130
Alignment:
Q  444 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 543  Q
    ||||||||||||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||| | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  544 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 619  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||| ||||| || ||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 503 - 635
Target Start/End: Original strand, 9064182 - 9064314
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    ||||||||||| || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  603 tcacacataattttatagttcaactcgctttta 635  Q
    ||||||  || ||||  ||||||||| ||||||    
T  9064282 tcacactcaagtttacggttcaactcactttta 9064314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 508 - 628
Target Start/End: Complemental strand, 49138891 - 49138772
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    |||||| || ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||| | |    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgatttttata 49138793  T
Q  608 cataattttatagttcaactc 628  Q
    || ||  ||||||||||||||    
T  49138792 cacaagcttatagttcaactc 49138772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 527 - 628
Target Start/End: Original strand, 26617443 - 26617544
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | |||||||| | | |||| |||||| ||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaac 26617542  T
Q  627 tc 628  Q
    ||    
T  26617543 tc 26617544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 679
Target Start/End: Complemental strand, 21691409 - 21691160
Alignment:
Q  441 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattga--- 537  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||       |||| | || |||||||| ||||| |||||       
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctg-------acatatttggttgttgtcgagtagtattgattc 21691317  T
Q  538 -----ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt 632  Q
         ||||| |   | ||||||||| |||||||  || |||||||| |||||| || |||| |||||||||||||| || ||||||||||||| | |||    
T  21691316 tacttttttgacagaagaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacactt 21691217  T
Q  633 t----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaa 679  Q
    |          ||||||||||||| |||| | |||||||||||||||||| ||||||    
T  21691216 ttacatgaatatatccaaacacaaatcacttgtagtcagaatcacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 529 - 611
Target Start/End: Complemental strand, 55187070 - 55186988
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacata 611  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 441 - 635
Target Start/End: Original strand, 16551853 - 16552038
Alignment:
Q  441 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 540  Q
    ||||||||||||||||  ||||  | ||||||||||||| ||||| |||||||||||||||       ||||| || ||| |||| | ||||  |||||     
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctga-------catgtatggttgctgtcgaatagagctgattc 16551945  T
Q  541 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||| |  || |||||| ||||||| |||||||||||  ||||  ||||||| |||||||||||||  || ||||||||||||||| ||||||    
T  16551946 tgcctctaggatggattctccttgaagctaggatttgtagtttttagttctagaattgattttcacac--aaatttatagttcaactcactttta 16552038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 550 - 622
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 622  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| |||||||||||||| || |||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 628
Target Start/End: Complemental strand, 53913706 - 53913586
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    |||||| || |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || ||||| |   || |||||||| | ||||||||||||    
T  53913706 acatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcaca 53913607  T
Q  608 cataattttatagttcaactc 628  Q
    ||||| ||||||||| |||||    
T  53913606 cataaatttatagttaaactc 53913586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 625
Target Start/End: Original strand, 30472909 - 30473007
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| |||||||||||| |||  ||||||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgattttcacatatatatttatagttcaa 30473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 448 - 591
Target Start/End: Complemental strand, 46345013 - 46344878
Alignment:
Q  448 gttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctcc 547  Q
    ||||||||||||||||  |||||||||||| ||||||| || |||| |||||||       ||||| || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  548 aaaattgattctacttgaagttaggatttgtaccttttgattct 591  Q
    | |||| ||||||||||||||||| ||||  | |||||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattct 46344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 609
Target Start/End: Original strand, 9134576 - 9134667
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacaca 9134667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 518 - 685
Target Start/End: Complemental strand, 39733756 - 39733582
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| |||||| ||||||| |  ||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgattatcacacaca--ttta 39733660  T
Q  618 tagttcaactcgcttt----------tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 685  Q
     ||||||||||  |||          ||||||||||||| |||| |||| ||||||| ||||||| ||||||||||||    
T  39733659 aagttcaactccttttttcataaatgtatccaaacacaaatcacttttaatcagaattacttttaaccaaaatcaatt 39733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 635
Target Start/End: Original strand, 39386599 - 39386716
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||| | ||||||||||||| || ||| |||||||||||||||| ||| ||  |||| || | ||| |||||| | |||||||||||||| |  ||||    
T  39386599 ttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatattta 39386698  T
Q  618 tagttcaactcgctttta 635  Q
     |||||||||| ||||||    
T  39386699 aagttcaactcactttta 39386716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 579
Target Start/End: Complemental strand, 49139025 - 49138894
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||||||||||||||||||| ||   |||||||||||| | ||||| ||||||||||||||       |||||| || ||||| || |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctg-------acatgtttggttgttttcaagtaaaattgatt 49138933  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgta 579  Q
     ||||| |||  ||| |||||||||||| |||||||||||    
T  49138932 gtgcctgcaagcttg-ttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 635
Target Start/End: Complemental strand, 52965937 - 52965856
Alignment:
Q  554 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||||||||||||||  |||| || |||||||||||| | |||||| | |||||||| |||||| |||||||| ||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcactttta 52965856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 628
Target Start/End: Complemental strand, 41370118 - 41370021
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||   || ||| |||||||||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt--gacgtaaatttatagttcaactc 41370021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 619
Target Start/End: Original strand, 43868087 - 43868203
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    ||||||||||| || ||| | || ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| ||||| | || | |||| ||||    
T  43868087 ttctaacatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagcttttaactcaaaagttaattt 43868186  T
Q  603 tcacacataattttata 619  Q
    | ||| |||| ||||||    
T  43868187 ttacatataaatttata 43868203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 534 - 592
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  534 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 592  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 584  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 529 - 603
Target Start/End: Original strand, 30889764 - 30889838
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| ||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgatttt 30889838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 624
Target Start/End: Complemental strand, 20712924 - 20712827
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttca 624  Q
    |||| ||||||||||||||||  ||  |||||||||||||| ||  |||||||  |||| |||  ||| |||||||||||||| |||||| |||||||    
T  20712924 agtaaaattgattttgcctcccgaaacgattctacttgaagctaaaatttgtagttttttattgaagaattgattttcacacacaattttgtagttca 20712827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    |||||||||||||||||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 501
Target Start/End: Original strand, 33843586 - 33843647
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 501  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843586 tatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 636
Target Start/End: Original strand, 45011893 - 45011958
Alignment:
Q  571 ggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttat 636  Q
    ||||||||| |||||||||||||| |||||||||||||| || |||||| ||  |||| |||||||    
T  45011893 ggatttgtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttat 45011958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 622
Target Start/End: Original strand, 30357510 - 30357582
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagtt 622  Q
    |||||||||||||||||| |  |||||||| ||||||||| || | |||||||| ||||| || |||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagtt 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 567
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  535 tgattttgcctccaaaattgattctacttgaag 567  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 687
Target Start/End: Original strand, 9134708 - 9134759
Alignment:
Q  636 tccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 687  Q
    |||||||||||||||| ||||| ||||| ||||| || ||||||||||||||    
T  9134708 tccaaacacaattcacttttagccagaaccacttctaaccaaaatcaattct 9134759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 603
Target Start/End: Original strand, 25927288 - 25927359
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| ||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttt 25927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 628
Target Start/End: Complemental strand, 31012854 - 31012747
Alignment:
Q  522 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatag 620  Q
    |||| ||||||| ||||||||  | || |||||||||||||  ||  |||||||||||  |||| ||| |||| |||| ||||||||||||  |||||||    
T  31012854 tgtcgagtagaactgattttgatttcagaattgattctactcaaaactaggatttgtagtttttaattttagaattgatttttcacacatatatttatag 31012755  T
Q  621 ttcaactc 628  Q
    ||||||||    
T  31012754 ttcaactc 31012747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 603
Target Start/End: Complemental strand, 2206451 - 2206377
Alignment:
Q  530 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttt 2206377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 22683838 - 22683947
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    |||| ||||||||||||||||| |||| ||| || ||||||| || ||| |||| ||||||| |||| |  ||||||| |||   || ||||| ||||||    
T  22683838 agtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttattgttcaa 22683937  T
Q  626 ctcgctttta 635  Q
    ||||||||||    
T  22683938 ctcgctttta 22683947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 635
Target Start/End: Complemental strand, 53713680 - 53713563
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||| | ||||||| ||||||  || | |||| ||| ||||||||| || |||||||| |||||||||||| | |||| || |||| | |  | ||    
T  53713680 ttgttgtcgaatagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatata 53713581  T
Q  618 tagttcaactcgctttta 635  Q
    ||||||||||| ||||||    
T  53713580 tagttcaactcactttta 53713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 477
Target Start/End: Complemental strand, 56013954 - 56013913
Alignment:
Q  436 tgtatatgtttggttccacttctagaggaaccaaaattgatt 477  Q
    ||||||||||||||||| |||||||| |||||| ||||||||    
T  56013954 tgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 9 - 699
Target Start/End: Complemental strand, 44141679 - 44140988
Alignment:
Q  9 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141679 agcagagatcaaatatcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatga 44141580  T
Q  109 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnn-tcaagaaaggccaagctaaatgagct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  44141579 tgttgtacggttctcgctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagct 44141480  T
Q  208 cagattctatcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttagaattcgctataagcttcaaaaggttggatttctttgtaatact 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  44141479 cagattctttcgtttgaaggcaaaacaaaagatgtattctcctaatccagaagttaggattcgctataagcttgaaaaggttggatttctttgtaatact 44141380  T
Q  308 aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttttaggacaatttta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44141379 aatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttataggacaatttta 44141280  T
Q  408 cccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttcta 507  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44141279 cccgttagcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttcta 44141180  T
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44141179 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcaca 44141080  T
Q  608 cataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctccccactaaact 699  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  44141079 cataattttatagttcaactcgcttttatccaaacacaattcacttttagtcagaatcacttttaaccaaaatcaattctccccactaaact 44140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 465 - 635
Target Start/End: Complemental strand, 13384819 - 13384656
Alignment:
Q  465 accaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 564  Q
    |||| |||||||||||||||| |||||||||||||||       ||||| || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  565 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||| ||  ||||||| |||||||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcactttta 13384656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 524 - 635
Target Start/End: Original strand, 32927864 - 32927975
Alignment:
Q  524 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 623  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||| ||||| || ||||||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttc 32927963  T
Q  624 aactcgctttta 635  Q
    ||||| ||||||    
T  32927964 aactcactttta 32927975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 518 - 628
Target Start/End: Original strand, 38868464 - 38868574
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | |||||||||||||| || ||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaattta 38868563  T
Q  618 tagttcaactc 628  Q
    |||||||||||    
T  38868564 tagttcaactc 38868574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 529 - 634
Target Start/End: Complemental strand, 4663011 - 4662906
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||| ||||| || | |||||||||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactc 4662912  T
Q  629 gctttt 634  Q
    ||||||    
T  4662911 gctttt 4662906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 518 - 635
Target Start/End: Original strand, 37684371 - 37684488
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | |||||||| |  || || ||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaattta 37684470  T
Q  618 tagttcaactcgctttta 635  Q
    || |||||||| ||||||    
T  37684471 taattcaactcactttta 37684488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 538 - 608
Target Start/End: Complemental strand, 38537457 - 38537387
Alignment:
Q  538 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgattttcacac 38537387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 527 - 610
Target Start/End: Complemental strand, 36200242 - 36200159
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 610  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| |||||||||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacat 36200159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 503 - 609
Target Start/End: Original strand, 26668503 - 26668609
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| |||||||||||||| ||  ||  |||||||  |||| |||||| | ||||||     
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgattc 26668602  T
Q  603 tcacaca 609  Q
    |||||||    
T  26668603 tcacaca 26668609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 529 - 591
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 591  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 26100233 - 26100148
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcactttta 26100148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 628
Target Start/End: Complemental strand, 15677903 - 15677824
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 628  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| |||| |||| ||||| || |||||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactc 15677824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 627
Target Start/End: Original strand, 35494990 - 35495065
Alignment:
Q  552 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||| ||||| || | ||||||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaact 35495065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 603
Target Start/End: Original strand, 10367973 - 10368046
Alignment:
Q  530 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || |||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 499  Q
    |||||||||||| |||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 619
Target Start/End: Complemental strand, 7244688 - 7244619
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 619  Q
    |||||||||||||||||  || ||| ||||  ||||||||||||| ||||||||||| || |||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttcacgcacaattttata 7244619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 635
Target Start/End: Complemental strand, 16972174 - 16972066
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||||||||||||| || | |||||| || |||||| ||| |||||||  |||| ||| |||| |||||||| | ||| || ||||| ||||||     
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaa 16972075  T
Q  627 tcgctttta 635  Q
    || ||||||    
T  16972074 tcactttta 16972066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 503 - 567
Target Start/End: Original strand, 35525363 - 35525427
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 567  Q
    |||| |||||| ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525363 ttctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 622
Target Start/End: Complemental strand, 463247 - 463128
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    |||||| |||| || |||||||| ||||||||||||||||  |  | |||| |||||| |||||  || ||||||||  || |||||||||| || ||||    
T  463247 ttctaatatgtttggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattt 463148  T
Q  603 tcacacataattttatagtt 622  Q
    ||||| | || |||||||||    
T  463147 tcacaaagaaatttatagtt 463128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 621
Target Start/End: Complemental strand, 32994329 - 32994258
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 621  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||| | ||| || ||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagt 32994258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 519
Target Start/End: Original strand, 35494916 - 35494995
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgatt 519  Q
    ||||||||| |||||||||| |||  |||  ||||||| |||||||  | |||||||||| ||||||||||||| |||||    
T  35494916 tatgtttgggtccacttctaaaggggccatgattgattctggaggtgcacaattgattcttagttctaacatgtttgatt 35494995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 18355935 - 18355852
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||||||||  |||||| ||||||||||  |||||||||||| | |||||||| ||||  || |||| |||||||||| ||||||    
T  18355935 aattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttttacac--aaatttaaagttcaactccctttta 18355852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 587
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  535 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 587  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 640 - 689
Target Start/End: Original strand, 29512900 - 29512949
Alignment:
Q  640 aacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 689  Q
    ||||||| |||  |||||||| ||||||||||| ||||||||||||||||    
T  29512900 aacacaaatcagttttagtcaaaatcacttttaaccaaaatcaattctcc 29512949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 440 - 607
Target Start/End: Original strand, 31721 - 31881
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||||||||       ||||| || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcaca 31881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 440 - 687
Target Start/End: Original strand, 4910803 - 4911053
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    ||||||||||||||||| |||||  || | |||||||| || | || |||||||||||||||       ||||| || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------ 633  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||| | || |||||||||| |||| ||||          
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacata 4910995  T
Q  634 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 687  Q
        |||||||||| || |||| |||||||||||| ||||||| ||||||| ||||||    
T  4910996 aatgtatccaaacataaatcacttttagtcagaattacttttaaccaaaattaattct 4911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 452 - 627
Target Start/End: Original strand, 3481946 - 3482121
Alignment:
Q  452 cacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaa 551  Q
    ||||| |||||| | || |||||||| || | || |||||||||||||||||| | |||||| |||||||||||  |||||||||||| || ||  | ||    
T  3481946 cacttttagagggatcataattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaa 3482045  T
Q  552 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    |||||| |||||||||||| |||||||| | ||||||| |||| |||||||||||||| || ||||||||||||||    
T  3482046 ttgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaact 3482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 434 - 609
Target Start/End: Complemental strand, 5724826 - 5724658
Alignment:
Q  434 tttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaa 533  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||| | || || |||||||||||||||       ||||| ||  || | ||  ||||||    
T  5724826 tttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaa 5724734  T
Q  534 ttgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||| |||||    
T  5724733 ttgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacaca 5724658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 6654200 - 6654102
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 444 - 635
Target Start/End: Complemental strand, 25195550 - 25195368
Alignment:
Q  444 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 543  Q
    |||||||||||||||||||||||||||||||||| |||| || || |||||||||||       |||||| || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  544 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | |||||||||| ||| || |||| | |||||||| ||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcactttta 25195368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 537 - 621
Target Start/End: Complemental strand, 7952809 - 7952725
Alignment:
Q  537 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 621  Q
    ||||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| |||  ||||||||| || ||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttatagt 7952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 16540082 - 16540190
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||| | || |||| ||||||  | |  ||||||||| |||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaac 16540181  T
Q  627 tcgctttta 635  Q
    || ||||||    
T  16540182 tcactttta 16540190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 635
Target Start/End: Complemental strand, 1485256 - 1485148
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| |||||||| ||||  || ||||| |||||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaac 1485157  T
Q  627 tcgctttta 635  Q
    || ||||||    
T  1485156 tcactttta 1485148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 550 - 609
Target Start/End: Complemental strand, 6896037 - 6895978
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||| ||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttattttcgcaca 6895978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 528 - 635
Target Start/End: Original strand, 26280581 - 26280688
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | |||||||| ||  | || ||||||||| ||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttttacgtacaaatttatagttaaact 26280680  T
Q  628 cgctttta 635  Q
    | ||||||    
T  26280681 cactttta 26280688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 601
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 601  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 608
Target Start/End: Original strand, 2234490 - 2234571
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| |||||||| ||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattttaacac 2234571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 685
Target Start/End: Original strand, 4908051 - 4908105
Alignment:
Q  631 ttttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 685  Q
    |||||||||||||||| |||| |||||  ||||||||||||| ||||||||||||    
T  4908051 ttttatccaaacacaaatcacttttaggaagaatcacttttaaccaaaatcaatt 4908105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 852512 - 852588
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||| ||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacac 852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 572
Target Start/End: Complemental strand, 2008498 - 2008403
Alignment:
Q  470 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 569  Q
    |||||||||||||||| |||||||| ||||||       ||||| |||||||| || ||||||||| |||||| ||||| |||  ||||||||||||| |    
T  2008498 aattgattttggaggtgtagaattgtttctga-------catgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagct 2008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 10400805 - 10400729
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | ||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgatttt 10400729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 560
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  529 tagaattgattttgcctccaaaattgattcta 560  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 635
Target Start/End: Complemental strand, 434345 - 434239
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||||||| | | || |||||||| || |||||||||  |||  || ||||||||| |||| |||||||| | |||||| |||| | ||||||||    
T  434345 tagaattgatttttctttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactc 434246  T
Q  629 gctttta 635  Q
     ||||||    
T  434245 actttta 434239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 628
Target Start/End: Original strand, 25195848 - 25195926
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||||| || ||  |||||||| || |||||||||||||| |||| ||  ||||| || |||||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaactc 25195926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 635
Target Start/End: Original strand, 34620863 - 34620969
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34620863 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34620962  T
Q  629 gctttta 635  Q
     ||||||    
T  34620963 actttta 34620969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 635
Target Start/End: Original strand, 34748300 - 34748406
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||| |||||||||||  |||||||||||| ||||| ||| | |  || ||| |||||||||| |||||||| ||||  || |||||  ||||||||    
T  34748300 tagaattaattttgcctccggaattgattctacatgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactc 34748399  T
Q  629 gctttta 635  Q
     ||||||    
T  34748400 actttta 34748406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaag 567  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 587
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  531 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 587  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 628
Target Start/End: Original strand, 17225875 - 17225928
Alignment:
Q  575 ttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||| |||||||||||||| |||||||| ||| | || |||||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactc 17225928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 521 - 687
Target Start/End: Complemental strand, 33019272 - 33019096
Alignment:
Q  521 ttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatag 620  Q
    ||||| |||| |||||||| |||||| | |||||||| || |||||| ||| ||||||| |||||| || |||| ||||||||||||||||| |||||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  621 ttcaactcgctttt----------atccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 687  Q
    |||||||| |||||          |||||||||||| |||| |||||||||||||||||||| ||||||||||||||    
T  33019172 ttcaactcacttttacatgaatgcatccaaacacaaatcacttttagtcagaatcacttttaaccaaaatcaattct 33019096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 440 - 610
Target Start/End: Original strand, 30503104 - 30503267
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||| ||||||||||||||| |||   |||||||||||||||| || |||||||||||||       |||||||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacat 610  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||| ||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 527 - 636
Target Start/End: Original strand, 10644578 - 10644687
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  |||| ||| |||| || | ||||| |||||| |||||||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaac 10644677  T
Q  627 tcgcttttat 636  Q
    || |||||||    
T  10644678 tcacttttat 10644687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 505 - 635
Target Start/End: Complemental strand, 11504193 - 11504064
Alignment:
Q  505 ctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttc 604  Q
    ||||||||| |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| |||| ||| |||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattatagaattg-ttttc 11504095  T
Q  605 acacataattttatagttcaactcgctttta 635  Q
    ||||| ||  |||||||||||||| ||||||    
T  11504094 acacacaaagttatagttcaactcactttta 11504064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattct 499  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 2002805 - 2002723
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||| |||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacaca 2002723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 633
Target Start/End: Original strand, 31453358 - 31453464
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||  | ||||||||||| || || |||| |||| |||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttcacgcacaaatttagagtttaac 31453457  T
Q  627 tcgcttt 633  Q
    || ||||    
T  31453458 tcacttt 31453464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 608
Target Start/End: Original strand, 42740968 - 42741033
Alignment:
Q  543 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||| ||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 531 - 635
Target Start/End: Original strand, 16518758 - 16518861
Alignment:
Q  531 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 630  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| ||||||||| || || ||| ||| || || || ||||||||||||||| |    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgattata-agatgacttttacgcacaaatttatagttcaactcac 16518856  T
Q  631 tttta 635  Q
    |||||    
T  16518857 tttta 16518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 628
Target Start/End: Original strand, 22535968 - 22536074
Alignment:
Q  522 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 621  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||  |||| |  ||||||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttgcacacatatttatagt 22536067  T
Q  622 tcaactc 628  Q
    | |||||    
T  22536068 taaactc 22536074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 518 - 627
Target Start/End: Original strand, 3352042 - 3352151
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 3352141  T
Q  618 tagttcaact 627  Q
    |  |||||||    
T  3352142 tgtttcaact 3352151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 635
Target Start/End: Original strand, 42982523 - 42982627
Alignment:
Q  533 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgc 630  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||| ||||| || |||||  | |||||| |    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcac 42982622  T
Q  631 tttta 635  Q
    |||||    
T  42982623 tttta 42982627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 635
Target Start/End: Original strand, 33502223 - 33502320
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||||||||||||||||||| |||||||||||||          ||||||| |||||||||||| | |||||||| ||||| |  ||||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact----------atttgtaacttttgattctaaaattgatttttacacacatatttatagttcaact 33502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 503 - 628
Target Start/End: Original strand, 12037012 - 12037137
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    ||||||||||| || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  603 tcacacataattttatagttcaactc 628  Q
    ||| | | || ||||| |||||||||    
T  12037112 tcataaacaaatttatggttcaactc 12037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 26032122 - 26032037
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||||| ||||||||||||| ||||||| | |||||||||  | |||| ||  |||||||| |||||| |||||||| ||||||    
T  26032122 aattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcactttta 26032037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 550 - 614
Target Start/End: Original strand, 43501123 - 43501187
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 614  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| |||||| | ||||| ||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgattctaacacaaaatt 43501187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 562
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctact 562  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaag 567  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 570
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagtta 570  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 628
Target Start/End: Complemental strand, 5533113 - 5533040
Alignment:
Q  555 attctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||||||| ||  ||||||| |||||||||||  | |||||||  |||||||| |||||| ||||||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactc 5533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 7629757 - 7629814
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||||||||| | ||||| |||| ||||||| | ||||| |||||||||||    
T  7629757 tatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgatt 7629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 21659693 - 21659770
Alignment:
Q  526 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| ||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgatttt 21659770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 587
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 587  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 529 - 687
Target Start/End: Original strand, 42858085 - 42858253
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | |||||||||||||| || |||||||||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  629 gct----------tttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattct 687  Q
     ||          ||||| ||||||||  |||| |||||||||||||| ||||| ||||||||||||||    
T  42858185 acttttacatgaatttattcaaacacagatcacttttagtcagaatcatttttaaccaaaatcaattct 42858253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 444 - 609
Target Start/End: Original strand, 11647981 - 11648139
Alignment:
Q  444 tttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 543  Q
    ||||| |||||||||||||| |||| |||||||||||| ||| || |||||||| |||       ||||| |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  544 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacaca 11648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 532 - 623
Target Start/End: Original strand, 14299310 - 14299401
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 623  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||||||||||| ||||||||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 535 - 636
Target Start/End: Original strand, 9818717 - 9818819
Alignment:
Q  535 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactcgcttt 633  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||| |||| | ||| || ||||||||||||||| ||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttt 9818816  T
Q  634 tat 636  Q
    |||    
T  9818817 tat 9818819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 6951392 - 6951307
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||  |||||||| |||||| ||||| || ||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcactttta 6951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 545 - 634
Target Start/End: Original strand, 38845436 - 38845525
Alignment:
Q  545 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttt 634  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||||| || | ||||||| ||||| |||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttt 38845525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 685
Target Start/End: Complemental strand, 18851272 - 18851024
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| ||||       || ||| || ||| | || | ||||||||||     
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctg-------acgtgtttggttgctatcaattagaattgatc 18851180  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctt------- 632  Q
     |  | | | |||||||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |  ||||||||| ||||| |||           
T  18851179 ctatccctataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatg 18851080  T
Q  633 ---ttatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaatt 685  Q
       ||||||||||||||  ||| |||||||| ||| ||||||| ||||||||||||    
T  18851079 aagttatccaaacacaaaccacatttagtcaaaattacttttaaccaaaatcaatt 18851024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 518 - 636
Target Start/End: Complemental strand, 28110557 - 28110439
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||||| | ||||||||| ||  |  |||||||||| || || ||||| ||||||||| ||||||||| |||| |||||||||||||| || ||||    
T  28110557 ttgttgtccatttgaattgattctgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaattta 28110458  T
Q  618 tagttcaactcgcttttat 636  Q
    ||||| ||||| |||||||    
T  28110457 tagttgaactcacttttat 28110439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 503 - 579
Target Start/End: Complemental strand, 27374425 - 27374349
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 579  Q
    |||| |||||| || ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374425 ttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 635
Target Start/End: Complemental strand, 42439726 - 42439619
Alignment:
Q  529 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| |||| |  ||||||| ||||  |||||||| ||||||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaact 42439627  T
Q  628 cgctttta 635  Q
    | ||||||    
T  42439626 cactttta 42439619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 34250461 - 34250379
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| |||||||||||| | ||| ||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacaca 34250379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 628
Target Start/End: Original strand, 36290001 - 36290111
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | |||||||||| ||| |  ||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgattttcagacacatattta 36290100  T
Q  618 tagttcaactc 628  Q
    |||||||||||    
T  36290101 tagttcaactc 36290111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 532 - 628
Target Start/End: Complemental strand, 13171866 - 13171769
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttga-ttttcacacataattttatagttcaactc 628  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  ||||||||||| |  ||| |||||| ||| || ||||||||| |||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattctataaatgatttttcatacaaaaatttatagttaaactc 13171769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 623
Target Start/End: Complemental strand, 22226426 - 22226250
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| || ||||||||||||||       |||||| || |||||||| | || ||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctg-------acatgtttggttgttgtcgactaaaattgatt 22226334  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttc 623  Q
    |||  |     ||||||||||||||||| ||| ||||||| ||||||||| |||| || | ||| ||||| || |||| |||||    
T  22226333 ttgttttgttgattgattctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttc 22226250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 608
Target Start/End: Original strand, 36639912 - 36639993
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||| ||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgttttttacac 36639993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 626
Target Start/End: Original strand, 39097244 - 39097320
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    |||||||||||||||||| ||  ||||||| ||||| ||| || | ||||||||||||||||| |||| ||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaatttaaagttcaac 39097320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 580  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 31906239 - 31906342
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 631  Q
    ||||| |||| |||| | |||||||| ||||||||| || |||||||| ||||||||| || | ||||| ||  || |||| ||||||||||||||| ||    
T  31906239 aattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcact 31906338  T
Q  632 ttta 635  Q
    ||||    
T  31906339 ttta 31906342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 628
Target Start/End: Original strand, 5468729 - 5468850
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta-gagttgattttcac 606  Q
    |||||| ||||||||||| | || |||||||| |||||||| | ||||||||||||||   |||||||| ||  |||| ||| ||  | ||||||||||     
T  5468729 acatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttgagactaggatttataatttttaattttataatttgattttcat 5468828  T
Q  607 acataattttatagttcaactc 628  Q
    ||| || |||||||||||||||    
T  5468829 acacaaatttatagttcaactc 5468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 628
Target Start/End: Original strand, 18637282 - 18637358
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||| |||||||| || |||  ||| |||||||||||||| |||||||| ||||| |  |||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacacaca--tttatagttcaactc 18637358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 603
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 603  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 3043194 - 3043137
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||| ||||||||||| | |||||| ||||||||||| | ||||| |||||||||||    
T  3043194 tatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgatt 3043137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 564
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  535 tgattttgcctccaaaattgattctacttg 564  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 557
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgatt 557  Q
    |||||| |||||||| || |||||||||||||||||||| | ||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 592  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 440 - 635
Target Start/End: Complemental strand, 28084078 - 28083890
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    |||||||| |||||||||||||||| |||||||||| | |||  || |||||||||||||||       ||| | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||| || |  |||||||||||||||||| ||| ||||||| |||||||||||| | || ||||| ||||| || |||  |||||| ||| ||||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcactttta 28083890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 553 - 687
Target Start/End: Original strand, 30557505 - 30557647
Alignment:
Q  553 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt----------tatccaaac 642  Q
    |||||||| |||||| |||||||||||  ||||||||||||| |||||||||||||  || ||||||||||||||| ||||          |||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaac 30557602  T
Q  643 acaattcacctttagtcagaatcacttttacccaaaatcaattct 687  Q
    |||| |||| | |||||||| ||||||||| ||||||||||||||    
T  30557603 acaaatcacttctagtcagagtcacttttaaccaaaatcaattct 30557647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 6021779 - 6021887
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| |||||||||||| | | |||||| ||||  || ||||| |||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagatttttacactcaagtttatggttcaac 6021878  T
Q  627 tcgctttta 635  Q
    || ||||||    
T  6021879 tcactttta 6021887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 559 - 635
Target Start/End: Original strand, 7524120 - 7524196
Alignment:
Q  559 tacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || ||||||||||||||| ||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcactttta 7524196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 528 - 635
Target Start/End: Complemental strand, 38797738 - 38797631
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||||||| || |||||||  |||||||| |||||||||||| |||||||| ||| | | || ||| |||||||||||||| || ||||||||||||||    
T  38797738 gtagaattggttatgcctccttaattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttcacacacaaatttatagttcaact 38797639  T
Q  628 cgctttta 635  Q
    | ||||||    
T  38797638 cactttta 38797631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 529 - 635
Target Start/End: Original strand, 3016140 - 3016245
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactc 628  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| ||||| || |||||||| ||||  |||||||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactc 3016238  T
Q  629 gctttta 635  Q
     ||||||    
T  3016239 actttta 3016245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 635
Target Start/End: Original strand, 11049252 - 11049333
Alignment:
Q  554 gattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||| ||||| || |||||||||||| || ||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcactttta 11049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 628
Target Start/End: Original strand, 1514317 - 1514419
Alignment:
Q  526 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||| ||||| || ||||| ||||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaa 1514416  T
Q  626 ctc 628  Q
    |||    
T  1514417 ctc 1514419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 603
Target Start/End: Complemental strand, 31362310 - 31362239
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| ||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 441 - 689
Target Start/End: Complemental strand, 2099873 - 2099625
Alignment:
Q  441 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattt 540  Q
    ||||||||||||  ||||||||||   | |||||||| ||||||| ||||||||||| ||| ||       || |||||| |||| |||||||||||||     
T  2099873 atgtttggttcc--ttctagaggagttagaattgattctggaggtgtagaattgattatgactt-------gtttgattgatgtcgagtagaattgattg 2099783  T
Q  541 tgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttt------- 633  Q
    |  ||||| |||||||| || |||||| |  ||||||||  ||||| || |||| ||||||||||||||||| ||||||| |||||||  |||           
T  2099782 t--ctccagaattgattgtaattgaagctgagatttgtagattttggttatagaattgattttcacacataaatttatagctcaactcattttttatatg 2099685  T
Q  634 ----tatccaaacacaattcacctttagtcagaatcacttttacccaaaatcaattctcc 689  Q
        ||||||||||||| |||| |||| ||| ||| ||||||| ||||||||||||||||    
T  2099684 aatgtatccaaacacaaatcacttttactcaaaattacttttaaccaaaatcaattctcc 2099625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 7790729 - 7790644
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||| ||||| || ||||| ||||||||| ||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 614
Target Start/End: Complemental strand, 36780311 - 36780139
Alignment:
Q  436 tgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 535  Q
    |||||||||||| ||  |||| |||||| |||| |||||||| ||||||| ||||||||||| |||        |||| || |||||||| ||| | |||    
T  36780311 tgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgat-------atgtttggttgttgtcgagttgtatt 36780219  T
Q  536 gattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgattttcacacataatt 614  Q
     |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||| ||| |||||    
T  36780218 aattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgattttcgcacgtaatt 36780139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 518 - 635
Target Start/End: Complemental strand, 47322025 - 47321909
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| |||||||||| ||| || ||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgattttcatacacaaattta 47321927  T
Q  618 tagttcaactcgctttta 635  Q
    |||||||| || ||||||    
T  47321926 tagttcaattcactttta 47321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 48549110 - 48549046
Alignment:
Q  539 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| ||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 628
Target Start/End: Original strand, 3416038 - 3416156
Alignment:
Q  510 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||| ||||||| ||  |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||| |||||    
T  3416038 atgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacaca 3416137  T
Q  610 taattttatagttcaactc 628  Q
     || ||||||||| |||||    
T  3416138 caaatttatagtttaactc 3416156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 518 - 620
Target Start/End: Complemental strand, 34387812 - 34387710
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatttta 617  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | |||||||||||||| || ||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaattta 34387713  T
Q  618 tag 620  Q
    |||    
T  34387712 tag 34387710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 646
Target Start/End: Original strand, 50571264 - 50571377
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 631  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||  |||| |||| ||| ||  ||||||||||| ||  |    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctagaactgatgttcagacacaaagttatagttcaattc-at 50571362  T
Q  632 tttatccaaacacaa 646  Q
    | |||||||||||||    
T  50571363 tatatccaaacacaa 50571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 508 - 623
Target Start/End: Complemental strand, 34721966 - 34721854
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    |||||| ||||||||||  | || ||||||||||||||  | ||||||||||   ||||||||||||||||   |||| |||||| | ||||||||||||    
T  34721966 acatgtttgattgttgttaaatataattgattttgcctttagaattgattct---tgaagttaggatttgttgttttttattctataattgattttcaca 34721870  T
Q  608 cataattttatagttc 623  Q
    || || ||||||||||    
T  34721869 cacaaatttatagttc 34721854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 635
Target Start/End: Complemental strand, 30850483 - 30850401
Alignment:
Q  553 tgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||||||||||||  |||||||||||  |||| ||| |||| |||||||| ||| | || ||||||||||||||| ||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcactttta 30850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 50569753 - 50569655
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    ||||||||||||||| |||| |||||| || || ||||||  |||||| |||| ||||||| |||| | |||| ||||||| | || ||||||||||||    
T  50569753 agtagaattgattttacctcaaaaattaatgctgcttgaaactaggatctgtaacttttgaatctataattgaatttcacaaacaaatttatagttcaa 50569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 527 - 609
Target Start/End: Complemental strand, 51500939 - 51500862
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||| |||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 686
Target Start/End: Original strand, 4887718 - 4887837
Alignment:
Q  565 aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgcttttatccaaacacaattcacctttagtcagaat 664  Q
    |||||| |||||||| |  |||||| |||| |||||||||||||| || ||||||||| ||||  |||| || ||||||||| |||| ||| |||| |||    
T  4887718 aagttaagatttgtaaccattgatt-tagaattgattttcacacacaaatttatagttaaacttacttt-attcaaacacaaatcacttttggtcaaaat 4887815  T
Q  665 cacttttacccaaaatcaattc 686  Q
     | ||||| |||||||||||||    
T  4887816 tatttttagccaaaatcaattc 4887837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 627
Target Start/End: Complemental strand, 28287423 - 28287346
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| |||||||| ||||  || ||||| ||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 608
Target Start/End: Complemental strand, 10325043 - 10324967
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||| ||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 609
Target Start/End: Original strand, 3909827 - 3909918
Alignment:
Q  518 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||||||| |||| || | ||||||| | |||||| |||||  |||||||||||||| ||||  |||| ||| |||| ||||||||||||||    
T  3909827 ttgttgtcaagtataactcattttgctttcaaaatcgattcagcttgaagttaggatatgtagattttcattatagaattgattttcacaca 3909918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 497
Target Start/End: Complemental strand, 15478196 - 15478134
Alignment:
Q  435 ttgtatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    |||| ||||||||||||||||| | ||||| ||||| |||||||| | ||| |||||||||||    
T  15478196 ttgtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgatt 15478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 619
Target Start/End: Original strand, 33733954 - 33734036
Alignment:
Q  537 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttata 619  Q
    |||||| || ||||||||||| || || ||||||| |||| || |||||||||| ||  |||||||| |||||||| ||||||    
T  33733954 attttgtcttcaaaattgattgtatttaaagttagaatttttaacttttgattcgagcattgatttttacacataaatttata 33734036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 580
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 580  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 8130853 - 8130910
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||||||||||| ||||| |||||||||||| |  | || |||||||||||    
T  8130853 tatgtttggttccacttctggaggagccaaaattgattctaaaagtgtagaattgatt 8130910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 621
Target Start/End: Complemental strand, 15986326 - 15986237
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagt 621  Q
    |||| |||||||||||| |||||||| || |||||  ||||||||  |  |||| |||||||| ||||| |||||||| || ||||||||    
T  15986326 aattaattttgcctccagaattgattatagttgaaactaggatttcaagttttttattctagaattgatattcacacacaaatttatagt 15986237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 635
Target Start/End: Original strand, 34915088 - 34915149
Alignment:
Q  574 tttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||| |||||||||||||| |||||| | |||||  |||||||| |||||||| ||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcactttta 34915149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 45660938 - 45660878
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 501  Q
    ||||||| ||||||||||| ||||  |||||||||| |||||||||  ||||||||||||||    
T  45660938 tatgtttcgttccacttctggaggggccaaaattga-tttggaggtgaagaattgattctga 45660878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 503 - 634
Target Start/End: Complemental strand, 41386949 - 41386818
Alignment:
Q  503 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 602  Q
    |||| |||||| |||||| | || |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |    
T  41386949 ttctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgatat 41386850  T
Q  603 tcacacataattttatagttcaactcgctttt 634  Q
    | ||||| || |||||| |||||||| |||||    
T  41386849 ttacacacaaatttataattcaactcactttt 41386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 532 - 635
Target Start/End: Original strand, 40491558 - 40491661
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgct 631  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||| ||||| || |||| |||| ||||| ||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcact 40491657  T
Q  632 ttta 635  Q
    ||||    
T  40491658 ttta 40491661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 532 - 609
Target Start/End: Complemental strand, 15903635 - 15903558
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||  ||  | ||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttgaagcttcaattgattttcacaca 15903558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 508 - 608
Target Start/End: Original strand, 27571818 - 27571918
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    |||||| |||||| | || |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| |||||||| |||    
T  27571818 acatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgattttaaca 27571917  T
Q  608 c 608  Q
    |    
T  27571918 c 27571918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 607
Target Start/End: Original strand, 22195820 - 22195919
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcaca 607  Q
    |||||| ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||||||    
T  22195820 acatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 515 - 625
Target Start/End: Original strand, 35772221 - 35772331
Alignment:
Q  515 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 614  Q
    ||||||||||  | |||||||| || || |||||||||| ||||||||| || ||| ||||||||  |||||||| |||| |||||||||||| |||| |    
T  35772221 tgattgttgtagaatagaattggttctgtctccaaaatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaat 35772320  T
Q  615 ttatagttcaa 625  Q
    ||||| |||||    
T  35772321 ttataattcaa 35772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 28725160 - 28725081
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | |||||| ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 608
Target Start/End: Complemental strand, 5489956 - 5489875
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | |||||||| ||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgattttaacac 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 584
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 584  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 587
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 587  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 603
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 603  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 608
Target Start/End: Complemental strand, 30182404 - 30182325
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||| ||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttttacac 30182325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||| ||||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 636
Target Start/End: Original strand, 25156176 - 25156284
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtac----cttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    |||||||||| |||| |||||||||||  ||| ||||||| ||||||||     |||| |||||||| |||||||| |||||||| || |||  ||||||    
T  25156176 aattgatttttcctctaaaattgattcatcttaaagttagaatttgtacgtagttttttattctagaattgatttttacacataaattaataaatcaact 25156275  T
Q  628 cgcttttat 636  Q
    | |||||||    
T  25156276 cacttttat 25156284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 529 - 567
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  529 tagaattgattttgcctccaaaattgattctacttgaag 567  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattct 591  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 635
Target Start/End: Complemental strand, 38123753 - 38123668
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||||||||||||||| ||| | ||||| ||| | |||||||| |||||||| ||||  || ||||| | ||||||| ||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcactttta 38123668  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 440 - 609
Target Start/End: Complemental strand, 25359763 - 25359602
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 539  Q
    ||||||||||||||||| |||||   ||| |||||||| ||||||| |||||||| ||||       | ||||| || ||| |||| | || ||||||||    
T  25359763 tatgtttggttccacttttagagtggccagaattgattatggaggtatagaattgcttct-------accatgtttggttgctgtcaaata-aattgatt 25359672  T
Q  540 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacaca 609  Q
     |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||||||||    
T  25359671 ctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgattttcacaca 25359602  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 515 - 625
Target Start/End: Complemental strand, 40736659 - 40736550
Alignment:
Q  515 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataatt 614  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  |||||||||||||| || ||||||||||| || |    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga-ttaattttcacacacaaat 40736561  T
Q  615 ttatagttcaa 625  Q
    ||||| |||||    
T  40736560 ttataattcaa 40736550  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 508 - 606
Target Start/End: Original strand, 54596774 - 54596872
Alignment:
Q  508 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcac 606  Q
    |||||| || ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| |||||||||||    
T  54596774 acatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgattttcac 54596872  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  438 tatatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 501  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 628
Target Start/End: Complemental strand, 32523451 - 32523349
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||| ||||| || |||| |||| ||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacacacaaatttagagtttaa 32523352  T
Q  626 ctc 628  Q
    |||    
T  32523351 ctc 32523349  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 52364049 - 52364134
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||| |||||||||||| || ||||| || |||||||||||| | |||||||||| |||||| |||| |||||||||| ||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcactttta 52364134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 591  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 527 - 636
Target Start/End: Original strand, 35058336 - 35058446
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac-ataattttatagttcaa 625  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| |||||||| ||||   ||| |||| ||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattttaacactcaaatattattgttcaa 35058435  T
Q  626 ctcgcttttat 636  Q
    ||| |||||||    
T  35058436 ctcacttttat 35058446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 532 - 608
Target Start/End: Complemental strand, 37335139 - 37335063
Alignment:
Q  532 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||| ||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgatttttacac 37335063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 628
Target Start/End: Original strand, 44771670 - 44771770
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaact 627  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||| |||||| | |||  |||||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttttacacattaatttgaagttcaact 44771769  T
Q  628 c 628  Q
    |    
T  44771770 c 44771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 594
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 594  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 530 - 625
Target Start/End: Complemental strand, 35264518 - 35264423
Alignment:
Q  530 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| |||||||| |||| ||| ||||| ||||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgattttaacacttaaatttattgttcaa 35264423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||||||||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 52363960 - 52364017
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    ||||||||||||||||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 635
Target Start/End: Original strand, 36302158 - 36302266
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaac 626  Q
    ||||||||||||||||||| || | ||||||||| |||||| |||   ||| |  |||||||| |||| ||||||||  ||| ||| ||||| |||||||    
T  36302158 agtagaattgattttgccttcagagttgattctatttgaagctagagattggagattttgattttagaattgattttagcacttaaatttattgttcaac 36302257  T
Q  627 tcgctttta 635  Q
    || ||||||    
T  36302258 tcactttta 36302266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 510 - 558
Target Start/End: Complemental strand, 48410939 - 48410891
Alignment:
Q  510 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattc 558  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||    
T  48410939 atgtttgattgctttcgagtagaattgattttgcctccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 567
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  528 gtagaattgattttgcctccaaaattgattctacttgaag 567  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 550 - 605
Target Start/End: Original strand, 35058065 - 35058120
Alignment:
Q  550 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttca 605  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattttca 35058120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 586
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 586  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 31708303 - 31708241
Alignment:
Q  573 atttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    ||||||| |||||||||||||| |||||| | ||||| || |||||| |||||||| ||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcactttta 31708241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 635
Target Start/End: Complemental strand, 40147950 - 40147852
Alignment:
Q  537 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaactcgctttta 635  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||  |||| | | |||||  |||||||| ||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcactttta 40147852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 625
Target Start/End: Complemental strand, 47356355 - 47356257
Alignment:
Q  527 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacacataattttatagttcaa 625  Q
    |||| ||||||||||| ||  | ||| ||||| ||||||||||| ||||| ||   ||||||| |||| |||||||| |||||||| |||| |||||||    
T  47356355 agtataattgattttgtctttagaatcgattccacttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaa 47356257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 567
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  527 agtagaattgatttt-gcctccaaaattgattctacttgaag 567  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 608
Target Start/End: Complemental strand, 44958712 - 44958635
Alignment:
Q  531 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttcacac 608  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  ||||||| ||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgattttaacac 44958635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 497
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  441 atgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgatt 497  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 501
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  440 tatgtttggttccacttctagaggaaccaaaattgattttggaggtctagaattgattctga 501  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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