View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_10 (Length: 432)
Name: NF16244_low_10
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 127 - 432
Target Start/End: Original strand, 1180543 - 1180848
Alignment:
| Q |
127 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaatttatattatccatttgctacataatcagatctataatccatttccttttctt |
226 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1180543 |
acccttaccttctacatcaactatggatggcaacatcaaaattaaaacttatattatccatttgctacataatcagatctataatccatttccttttctt |
1180642 |
T |
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| Q |
227 |
tgatacatggcaggtatcataatcatatctatatatcaaagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaacaacatcacaa |
326 |
Q |
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| T |
1180643 |
tgatacatggcaggtatcataatcatatctatatatcaaagagtgaattgatttttttttaaaatagccaaaatttattccaatagcaaaaacatcacaa |
1180742 |
T |
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| Q |
327 |
gctgagatgttgtgcttggcaaaagccacaagtacacaagaacagaagaaacacaggcaaggctgaaaaattaaagcctaagcaccacactagcaatcac |
426 |
Q |
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| T |
1180743 |
gctgagatgttgtgcttggcaaaagccacaagtacacaggaacagaagaaacacaggcaaggctgaaaaattaacgcctaagccccacactagcaatcac |
1180842 |
T |
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| Q |
427 |
aaaata |
432 |
Q |
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|||||| |
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| T |
1180843 |
aaaata |
1180848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 1180434 - 1180513
Alignment:
| Q |
26 |
cgagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttctac |
105 |
Q |
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| T |
1180434 |
cgagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaactttcgaagaaagacgagagaagttctac |
1180513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 165 - 429
Target Start/End: Original strand, 1156403 - 1156667
Alignment:
| Q |
165 |
aaattaaaatttatattatccatttgctacataatcagatctataatccatttccttttctttgatacatggcaggtatcataatcatatctatatatca |
264 |
Q |
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| T |
1156403 |
aaattaaaacttatattattcatttgctacataatcagatctataatccatttccttttctttgatacatggcaagtatcataatcatatctatatatca |
1156502 |
T |
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| Q |
265 |
aagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaacaacatcacaagctgagatgttgtgcttggcaaaagccacaagtacaca |
364 |
Q |
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| T |
1156503 |
aagagtgaattgaactttttttaaaatagccaaaatttattccaatagcaaaaacatcacaagctgagatgttgtgcttggcaaaagccacaagtacaca |
1156602 |
T |
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| Q |
365 |
agaacagaagaaacacaggcaaggctgaaaaattaaagcctaagcaccacactagcaatcacaaa |
429 |
Q |
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| T |
1156603 |
ggaacagaagaaacacaagcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaa |
1156667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 1155805 - 1155892
Alignment:
| Q |
17 |
agaaataggcgagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttcta |
104 |
Q |
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| T |
1155805 |
agaaataggcgagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacttgcgaagaaagacgagagaagttcta |
1155892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 1155917 - 1155963
Alignment:
| Q |
127 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaa |
173 |
Q |
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| T |
1155917 |
acccttaccttctacatcagctatggatggcaacatcaaaattaaaa |
1155963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 50365612 - 50365690
Alignment:
| Q |
27 |
gagagatgctaaattggtgtgggtcccacgcttttgcttttcccttcaaacctgcgaagaaagacgagagaagttctac |
105 |
Q |
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|||||| ||| | |||||||||||||||||||||| | ||| || |||| || |||||||||||||||||| ||||| |
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| T |
50365612 |
gagagaggcttatttggtgtgggtcccacgctttttatcttctctccaaaattgagaagaaagacgagagaagctctac |
50365690 |
T |
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