View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_low_11 (Length: 429)

Name: NF16244_low_11
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_low_11
NF16244_low_11
[»] chr5 (3 HSPs)
chr5 (11-301)||(1156621-1156900)
chr5 (377-415)||(1156994-1157032)
chr5 (383-415)||(35468036-35468068)
[»] chr2 (1 HSPs)
chr2 (9-63)||(1180797-1180851)
[»] chr4 (2 HSPs)
chr4 (381-415)||(23127345-23127379)
chr4 (383-415)||(6447100-6447132)
[»] chr1 (3 HSPs)
chr1 (377-415)||(29232554-29232592)
chr1 (385-415)||(30721795-30721825)
chr1 (377-415)||(50372861-50372899)
[»] chr8 (3 HSPs)
chr8 (376-415)||(18754045-18754085)
chr8 (383-415)||(24100701-24100733)
chr8 (383-415)||(43638429-43638461)
[»] chr7 (2 HSPs)
chr7 (383-415)||(2430621-2430653)
chr7 (383-415)||(3563056-3563088)
[»] chr3 (2 HSPs)
chr3 (383-415)||(40687005-40687037)
chr3 (383-415)||(43747784-43747816)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 1156621 - 1156900
Alignment:
Q  11 gcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaaatacatnnnnnnnnnnnnnnnnnnttgcaacctctactctcctataacagaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||                  ||||| ||||||||||||||||||| |||    
T  1156621 gcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaattacataaaaaaa-----------ttgcagcctctactctcctataacataac 1156709  T
Q  111 aacagaaaatagctaaaacctcacaaaagagtgagttgaattgcaggaagggaatgtctatgtagaatagtgagctgattttttcatatatctggaggtg 210  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||    
T  1156710 aacataaaatagctaaaacctcacaaaagagtgagttgaattggaggaagggaaggtctgtgtagaatagtgagctgaatttttcatatatctgaaggtg 1156809  T
Q  211 gagaagggaatggataattgggaaattaagtgtggatgcccatcgatgaatttcttgtattatttttaattaaacattgatgaatttcttg 301  Q
    ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1156810 gagaagggaatagatgattgggaaatgaagtgtggatgcccatcgatgaatttcttgtattatttttaattaaacattgatgaatttcttg 1156900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 1156994 - 1157032
Alignment:
Q  377 cttctctctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  1156994 cttctctctttctcttataccaaactatacatcaaatct 1157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 35468036 - 35468068
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  35468036 tctttctcttataccaaacaatacatcaaatct 35468068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 1180797 - 1180851
Alignment:
Q  9 aggcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaaatacat 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1180797 aggcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaaatacat 1180851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 415
Target Start/End: Original strand, 23127345 - 23127379
Alignment:
Q  381 tctctttctcttataccaaaccatacatcaaatct 415  Q
    |||||||||||| ||||||||||||||||||||||    
T  23127345 tctctttctcttgtaccaaaccatacatcaaatct 23127379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 6447132 - 6447100
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  6447132 tctttctcttataccaaacaatacatcaaatct 6447100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Original strand, 29232554 - 29232592
Alignment:
Q  377 cttctctctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  29232554 cttctctctttctcttataccaaacaattcatcaaatct 29232592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 415
Target Start/End: Complemental strand, 30721825 - 30721795
Alignment:
Q  385 tttctcttataccaaaccatacatcaaatct 415  Q
    |||||||||||||||||||||||||||||||    
T  30721825 tttctcttataccaaaccatacatcaaatct 30721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 50372899 - 50372861
Alignment:
Q  377 cttctctctttctcttataccaaaccatacatcaaatct 415  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  50372899 cttcactctttctctcataccaaaccatacatcaaatct 50372861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 415
Target Start/End: Complemental strand, 18754085 - 18754045
Alignment:
Q  376 acttctctctttctctt-ataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  18754085 acttctctctttctcttgataccaaacaatacatcaaatct 18754045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 24100733 - 24100701
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  24100733 tctttctcttataccaaacaatacatcaaatct 24100701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 43638429 - 43638461
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  43638429 tctttctcttataccaaacaatacatcaaatct 43638461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 2430653 - 2430621
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  2430653 tctttctcttataccaaacaatacatcaaatct 2430621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 3563056 - 3563088
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||| |||||||||||||||||||||    
T  3563056 tctttctcttaaaccaaaccatacatcaaatct 3563088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 40687005 - 40687037
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  40687005 tctttctcttataccaaacaatacatcaaatct 40687037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 43747816 - 43747784
Alignment:
Q  383 tctttctcttataccaaaccatacatcaaatct 415  Q
    ||||||||||||||||||| |||||||||||||    
T  43747816 tctttctcttataccaaacaatacatcaaatct 43747784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University