View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_13 (Length: 381)
Name: NF16244_low_13
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 1432720 - 1432456
Alignment:
| Q |
19 |
ttatcatcattgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgttaggatcatttaagttgctcttca |
118 |
Q |
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| T |
1432720 |
ttatcatcattgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgttaggatcatttaagttgctcttca |
1432621 |
T |
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| Q |
119 |
atgcaataagggtatcacctgtgctaaaaggaagcaatattcagattcaaacatccttaataatattcagtaacttgaatttcgactttcattagacagc |
218 |
Q |
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| T |
1432620 |
atgcaataagggtatcacctgtgctaaaaggaagcaatattcagtttcaaacatccttaataatattcagtaacttgaacctcgactttcattagacagc |
1432521 |
T |
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| Q |
219 |
cttagtagcatacacctaaatactaggctaactataatactatacattgaagcaaatgtgagaag |
283 |
Q |
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| T |
1432520 |
cttagtagcatacacctaaatactaggctaactataatactatacatcaaagcaaatgtgagaag |
1432456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 1425642 - 1425499
Alignment:
| Q |
19 |
ttatcatcattgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgttaggatcatttaagttgctcttca |
118 |
Q |
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|||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| ||||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
1425642 |
ttatcaccattgcatgtaacatgaaaccacgtgcaaggattgacaagggtagcatcccaactttgaagaacattgttaggatcattcaagttgctcttca |
1425543 |
T |
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| Q |
119 |
atgcaataagggtatcacctgtgctaaaaggaagcaatattcag |
162 |
Q |
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| T |
1425542 |
atgcattcagtgcatcacctgtgctaaaaagaaccaatcttcag |
1425499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 1451393 - 1451260
Alignment:
| Q |
29 |
tgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgttaggatcatttaagttgctcttcaatgcaataag |
128 |
Q |
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||||||||||||||||||| ||||||||||| | ||||| || |||||||| || | || ||||||||||||||||||||||||| ||||||||||| |
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| T |
1451393 |
tgcatgtaacatgaaaccatgtgcagggattgagaagggtagaatcccaactttcaagagcattgttaggatcatttaagttgctcttgaatgcaataag |
1451294 |
T |
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| Q |
129 |
ggtatcacctgtgctaaaaggaagcaatattcag |
162 |
Q |
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| T |
1451293 |
catatcacctgtgctaaaacgaagcaatcttcag |
1451260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 1445211 - 1445060
Alignment:
| Q |
29 |
tgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgttaggatcatttaagttgctcttcaatgcaataag |
128 |
Q |
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||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||| | || |||||||||||||||||||| || | ||||||| ||| |
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| T |
1445211 |
tgcatgtaatatgaaaccacgtgcagggattgacaagggtagcatcccaactttgaagagcattgttaggatcatttaagttgttcctgaatgcaaaaag |
1445112 |
T |
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| Q |
129 |
ggtatcacctgtgctaaaaggaagcaatattcagattcaaacatccttaata |
180 |
Q |
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|| ||||||||| |||||| ||| |||| || || | |||||||| |||||| |
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| T |
1445111 |
ggcatcacctgttctaaaaagaaacaatctttagttgcaaacatcgttaata |
1445060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 1432426 - 1432365
Alignment:
| Q |
312 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtattatc |
373 |
Q |
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| T |
1432426 |
ccatattgaaaagccattctctaatataattatgaagtcttacacaatcacaaagtattatc |
1432365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 1438485 - 1438347
Alignment:
| Q |
19 |
ttatcatcattgcatgtaacatgaaaccactcgcagggattgacattggtagcattccaactttgaaaaacactgtt---aggatcatttaagttgctct |
115 |
Q |
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||||||||||||||| ||||||||||||| ||| ||||||||| ||||| || |||| | | ||||||| |||| ||||| ||| ||| || ||| |
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| T |
1438485 |
ttatcatcattgcatccaacatgaaaccacgtgcaaggattgacaagggtagtatcccaattgtcaaaaacattgttaggaggattattcaagctgttct |
1438386 |
T |
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| Q |
116 |
tcaatgcaataagggtatcacctgtgctaaaaggaagca |
154 |
Q |
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|||||||| | |||| ||||||||| |||||| |||||| |
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| T |
1438385 |
tcaatgcattcagggcatcacctgttctaaaaagaagca |
1438347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 1451235 - 1451198
Alignment:
| Q |
206 |
ttcattagacagccttagtagcatacacctaaatacta |
243 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| |
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| T |
1451235 |
ttcactagtcagccttagtagcatacacctaaatacta |
1451198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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