View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16244_low_14 (Length: 381)

Name: NF16244_low_14
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16244_low_14
NF16244_low_14
[»] chr4 (8 HSPs)
chr4 (10-140)||(36990471-36990601)
chr4 (10-140)||(36993301-36993431)
chr4 (300-369)||(36993590-36993659)
chr4 (302-369)||(37009739-37009806)
chr4 (312-369)||(36990755-36990812)
chr4 (302-355)||(37013806-37013859)
chr4 (47-140)||(37005186-37005277)
chr4 (302-352)||(37005413-37005463)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 36990471 - 36990601
Alignment:
Q  10 ataatacttgtttatgtgtgcaatgtttgttcaagggtgttttttaatagagaagaatgtgacaatcacatagctgagcattaaaaattctccgagaaga 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36990471 ataatacttgtttatgtgtgtaatgtttgttcaagggtgttttttagtagagaagaatgtgacaatcacatagctgatcattaaaaattctccgagaaga 36990570  T
Q  110 tatatacgggaagacggtctacgcatgcacg 140  Q
    |||||| ||||||||||||||||||||||||    
T  36990571 tatatatgggaagacggtctacgcatgcacg 36990601  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 36993301 - 36993431
Alignment:
Q  10 ataatacttgtttatgtgtgcaatgtttgttcaagggtgttttttaatagagaagaatgtgacaatcacatagctgagcattaaaaattctccgagaaga 109  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||| | |||||||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  36993301 ataatacttgtttatgtgtgtaatgtttgttgaagggtgttatttagtggagaagaatgtgacagccacatagttgatcattaaaaattctccgagaaga 36993400  T
Q  110 tatatacgggaagacggtctacgcatgcacg 140  Q
    |||||| | |||||| ||||| |||||||||    
T  36993401 tatatatgagaagaccgtctatgcatgcacg 36993431  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 300 - 369
Target Start/End: Original strand, 36993590 - 36993659
Alignment:
Q  300 aaggtgcatttatggataaatctaataaattattattcatgaattttgtgtgaattccatgatcttcatg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  36993590 aaggtgcatttatggataaatctaataaattattattcatgaattctgtgtgaattccatggtcttcatg 36993659  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 369
Target Start/End: Original strand, 37009739 - 37009806
Alignment:
Q  302 ggtgcatttatggataaatctaataaattattattcatgaattttgtgtgaattccatgatcttcatg 369  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  37009739 ggtgcatgtatggataaatctaataaattattattcataaattttgtgtgaattccatggtattcatg 37009806  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 36990755 - 36990812
Alignment:
Q  312 tggataaatctaataaattattattcatgaattttgtgtgaattccatgatcttcatg 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  36990755 tggataaatctaataaattattattcatgaattttgtgtgaattctattgtcttcatg 36990812  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 37013806 - 37013859
Alignment:
Q  302 ggtgcatttatggataaatctaataaattattattcatgaattttgtgtgaatt 355  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  37013806 ggtgcatttatggataactctaataaattattattcataaattttgtgtgaatt 37013859  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 37005186 - 37005277
Alignment:
Q  47 tgttttttaatagagaagaatgtgacaatcacatagctgagcattaaaaa-ttctccgagaagatatatacgggaagacggtctacgcatgcacg 140  Q
    ||||||||| ||||||||| |||||||| || |||||| | ||||||||| || |||||||||||||| |  |||||||||||||||||||||||    
T  37005186 tgttttttagtagagaaga-tgtgacaaccaaatagctaatcattaaaaagttatccgagaagatataca--ggaagacggtctacgcatgcacg 37005277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 37005413 - 37005463
Alignment:
Q  302 ggtgcatttatggataaatctaataaattattattcatgaattttgtgtga 352  Q
    ||||||| |||||||||||||| |||||||| |||||| ||| ||||||||    
T  37005413 ggtgcatgtatggataaatctattaaattataattcataaatcttgtgtga 37005463  T

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