View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16244_low_15 (Length: 371)
Name: NF16244_low_15
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 25251548 - 25251186
Alignment:
| Q |
1 |
ctatatttcttctcaggggatattgctcggtctatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25251548 |
ctatatttcttctcaggggatattgctcggtctatccaataccgctggagtactggctggtgttcttggaacagcagcaacaggttacattctgcaacat |
25251449 |
T |
|
| Q |
101 |
ggtaagtatttgttcttcatatttattcttactaaatgttaatggtcaattatctcggaaacttaaaatattacgtgaagccgtcaataattttattata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25251448 |
ggtaagtatttgttcttcatatttattcttactaaatgttaatggtcaattatctcagaaacttaaaatattacgtgaagccgtcaataattttattata |
25251349 |
T |
|
| Q |
201 |
tctcttaatggtgaagaatgagtatatatttctactgtcttaaatctgaaaagtatcaatttgatattgatagtttggcaaagaagcattattcgttcca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25251348 |
tctcttaatggtgaagaatgagtatatatttctactgtcttaaatctgaaaagtatcaatttggtattgatagtttggcaaagaagcattattcgttcca |
25251249 |
T |
|
| Q |
301 |
cctaatacttcaatgaaatcttatctttggaacaactgtatgacgccattcattctctctgct |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25251248 |
cctaatacttcaatgaaatcttatctttggaacaaccgtatgacgccattcattctctctgct |
25251186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University