View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_19 (Length: 336)
Name: NF16244_low_19
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 8033400 - 8033191
Alignment:
| Q |
18 |
tgaaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaattcagtgattatatttgcaatttttcatggcttacaaaatatgttgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8033400 |
tgaaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaatccagtgattatatttacaatttttcatggcttacaaaatatgttgtt |
8033301 |
T |
|
| Q |
118 |
ggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctgaaaagaaatttgtaaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033300 |
ggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctgaaaagaaatttgtaaata |
8033201 |
T |
|
| Q |
218 |
cacaaaacca |
227 |
Q |
| |
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|||||||||| |
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| T |
8033200 |
cacaaaacca |
8033191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 7970374 - 7970557
Alignment:
| Q |
20 |
aaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaattcagtgattatatttgcaatttt-tcatggcttacaaaatatgttgttg |
118 |
Q |
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|||| ||||| ||||||||| | ||||| |||||||| |||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
7970374 |
aaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattatatttacaattttctcatggcttacaaaatatgttgttg |
7970473 |
T |
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| Q |
119 |
gagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctgaaa |
202 |
Q |
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| T |
7970474 |
gcgcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctgaaa |
7970557 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 8043334 - 8043152
Alignment:
| Q |
20 |
aaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaattcagtgattatatttgcaatttttcatggcttacaaaatatgttgttgg |
119 |
Q |
| |
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|||| ||||| ||||||||| | ||||| |||||||| |||||||||||||| ||| |||| |||| |||||| |||||||||||| ||||||||| ||| |
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| T |
8043334 |
aaatttaatagaatgaaaagttaagcaagattatgattatcctaagaaaatttagtaattacatttacaatttctcatggcttacataatatgttgctgg |
8043235 |
T |
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| Q |
120 |
agcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctgaaa |
202 |
Q |
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| T |
8043234 |
agcaaaagcaaatcctccaaaaaatcctaagaggccaccgaaaaatgggaaggtaatggcaatgaacattgttaatgctgaaa |
8043152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 7977209 - 7977331
Alignment:
| Q |
82 |
atttgcaatttttcatggcttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaa |
181 |
Q |
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|||| ||||| || |||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
7977209 |
attttcaattgttaatggcttacaaagtatgttgttggagcaaaagcaaaccctccaaaaaaccctagaaggccatcgaaaaatgggaatgtaatagcaa |
7977308 |
T |
|
| Q |
182 |
tgaacattgtgaatgctgaaaag |
204 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
7977309 |
tgaacattgtgaatgctgaaaag |
7977331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 41380805 - 41380987
Alignment:
| Q |
20 |
aaatgtaatataatgaaaagatgagcaaaattatgataatcctaagaaaattcagtgattatatttgcaatttttcatggcttacaaaatatgttgttgg |
119 |
Q |
| |
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|||| ||||| |||||||||||||| || |||||||| ||| |||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
41380805 |
aaatttaatagaatgaaaagatgagtaagattatgattatc-taagaaaatttagtaattatatttacaatttctcatggcttacaaaatatgttgttgg |
41380903 |
T |
|
| Q |
120 |
agcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctgaaaa |
203 |
Q |
| |
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||||||||| ||||||||||||||||| || |||||||| ||||||||||| ||||| || | ||||||||| ||||||||||| |
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| T |
41380904 |
agcaaaagcaaatcctccaaaaaatcccaggaggccaccaaaaaatgggaaggtaatggctaagaacattgttaatgctgaaaa |
41380987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 43855252 - 43855151
Alignment:
| Q |
100 |
cttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgctg |
199 |
Q |
| |
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||||||||||||||||| |||||||| || ||||||||||||||||| || || |||| || |||||||| || || | | |||||||||||||||| |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgggaaggttatgcccacaaacattgtgaatgctg |
43855153 |
T |
|
| Q |
200 |
aa |
201 |
Q |
| |
|
|| |
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|
| T |
43855152 |
aa |
43855151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 14197281 - 14197381
Alignment:
| Q |
99 |
gcttacaaaatatgttgttggagcaaaagcgaatcctccaaaaaatcctagaaggccaccgaaaaatgggaatgtaatagcaatgaacattgtgaatgct |
198 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| || || |||||| |||||||||||||||| ||| |
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| T |
14197281 |
gcttacaaagtatgttgttggagcaaaagcaaatccaccaaaaaatcctagtagaccaccgaaaaacggaaaagtaataccaatgaacattgtgaacgct |
14197380 |
T |
|
| Q |
199 |
g |
199 |
Q |
| |
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| |
|
|
| T |
14197381 |
g |
14197381 |
T |
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