View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_2 (Length: 641)
Name: NF16244_low_2
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Original strand, 45190711 - 45191332
Alignment:
| Q |
18 |
atatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttacctcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190711 |
atatcattgttgttactagtagtgatgtatattaggtggttaaaaagacctttagattggaaagaaagtagaggtttctcttcatggctcttacctcttt |
45190810 |
T |
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| Q |
118 |
gtccaaaatctnnnnnnngttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaagagggac |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190811 |
gtccaaaatctaaaaaaagttgcagtgcaaacgcaaatgcatttgattcacctaagaataagcatggtggtcatgatgttcatcactctccaagagggac |
45190910 |
T |
|
| Q |
218 |
aggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattggttatggaggatttggtaaagtgtaccttggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45190911 |
aggaaggttctttcatttcatcgaattgcaacgagctacagataattttgatgaaaagagagtgattggttatggaggatttggtaaagtgtaccttggg |
45191010 |
T |
|
| Q |
318 |
acattggatgatggaacaaatgttgctgtaaaaagaggaggtggtggttctgagcaaggaataaatgagttcggaaccgaactaaacatgctttctaagc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
45191011 |
acattggatgatggaacaaatgttgctgtaaaaagaggaggtggtggttctgagcaaggaataaatgagttcagaaccgaactaaagatgctttctaagc |
45191110 |
T |
|
| Q |
418 |
tgcgacatcgccacctagtttcactaataggtttctgtgatgaaaactcagaaatggttcttgtatacgattacatgtctaatggcccttttcgctcgcg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191111 |
tgcgacatcgccacctagtttcactaataggtttctgtgatgaaaactcagagatggttcttgtatacgattacatgtctaatggcccttttcgctcgca |
45191210 |
T |
|
| Q |
518 |
cctttataactccaacttttctcctttgtcatggcaaaagaggcttgaaatatgcattggcgctgctcgtggtttgcattatctccatacaggtaattgt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45191211 |
cctttataactccaacttttctcctttgtcatggcaaaagaggcttgaaatatgcattggcgctgctcgtggtttgcattatctccatacaggtaattgt |
45191310 |
T |
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| Q |
618 |
gacaatttacattatcaaacag |
639 |
Q |
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| T |
45191311 |
tacaatttacattatcaaacag |
45191332 |
T |
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