View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_22 (Length: 328)
Name: NF16244_low_22
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 53460576 - 53460878
Alignment:
| Q |
18 |
gatagggcctttgaaatccaaaaaagaaaatgaatgatgattggcgaataaagactcaacatgttttagatggttggaaggnnnnnnngttcctaaaaaa |
117 |
Q |
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| T |
53460576 |
gatagggcctttgaaatccaaaaaagaaaatgaatgatgattggcgaataaagactcaacatgttttagatggttggaaggaaaaaaagttcctaaaaaa |
53460675 |
T |
|
| Q |
118 |
gcataattttggtccttcaaaatgaaa---ataattaactgggctctaatggaatttttagtattaatgtggttaagatagtatatagtgcccgttttga |
214 |
Q |
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| T |
53460676 |
gcataattttggtccttcaaaatgaaatgaataattaactaggctctaatggaatttttagtattaatgtggttaagatagtatatagtgcccgttttga |
53460775 |
T |
|
| Q |
215 |
tcccttttgaacaacatcgccactattcagcgagattgtgattttcgacgtggtctgaaaatatttttccatcctggtctcttttgcaatttctaatgtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53460776 |
tcccttttgaacaacatcgccactattcagcgagattgtgatttttgacatggtctgaaaatatttttccatcgtggtctcttttgcaatttctaatgtt |
53460875 |
T |
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| Q |
315 |
caa |
317 |
Q |
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||| |
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| T |
53460876 |
caa |
53460878 |
T |
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