View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_24 (Length: 305)
Name: NF16244_low_24
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11040850 - 11040565
Alignment:
| Q |
1 |
ggtgtattctacccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaat |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11040850 |
ggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaat |
11040751 |
T |
|
| Q |
101 |
gcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11040750 |
gcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaatttctacataagagtatctggttggctta |
11040651 |
T |
|
| Q |
201 |
agagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggtagactcc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11040650 |
agagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggaagactcc |
11040565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 11026147 - 11025866
Alignment:
| Q |
1 |
ggtgtattctacccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaat |
100 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026147 |
ggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaat |
11026048 |
T |
|
| Q |
101 |
gcttcctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
11026047 |
gcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttgatttctacataagagtatctggtgggctta |
11025948 |
T |
|
| Q |
201 |
agagctctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggtaga |
282 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11025947 |
agaactctatagtcttctaaaaacttttctacaattgcttgtttttctttctttagtatgtaagagtcataaatatggtaga |
11025866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 10930482 - 10930206
Alignment:
| Q |
6 |
attctacccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaatgcttc |
105 |
Q |
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|||||||||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
10930482 |
attctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacatttagtatcttcacagcaacaatgatttcttttgaaatgcttc |
10930383 |
T |
|
| Q |
106 |
ctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggcttaagagc |
205 |
Q |
| |
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|| |||| |||||||||||||| |||||||||||| | || | |||||||||||||||||| ||||||||| |||| |||||||| || ||||||||||| |
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| T |
10930382 |
ctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattcttttaatttcttcatatgagtatcttgtgggcttaagagc |
10930283 |
T |
|
| Q |
206 |
tctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggtaga |
282 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10930282 |
tctataatcttctaaaaacttttctataatggcttgtttttctttcttttgtatgtaagagtcataaatatggtaga |
10930206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 10992685 - 10992408
Alignment:
| Q |
7 |
ttctacccattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatcttcacagcaacactaaattcttttgaaatgcttcc |
106 |
Q |
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||||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| |||||||||||||||||||||| | | |||||||||||||||||| |
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| T |
10992685 |
ttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatcttcacagcaacaatgatttcttttgaaatgcttcc |
10992586 |
T |
|
| Q |
107 |
tttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggcttaagagct |
206 |
Q |
| |
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| |||| |||||||||||||| |||||||||||| | || | ||| |||||||||||||||||||||||||||||||||||||| || || ||||||||| |
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| T |
10992585 |
tctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaatttctacataagagtatctcgtgggtttaagagct |
10992486 |
T |
|
| Q |
207 |
ctatagtcttctaaaaacttttctataattgcttgtttttctttccttagtatgtaagagtcataaatatggtagact |
284 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| |
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| T |
10992485 |
ctataatcttctaaaaacttttctataattgcttgttttgctttgttcagtatgtaagagtcataaacgtggtagact |
10992408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 9171329 - 9171235
Alignment:
| Q |
105 |
cctttataaacagttccataggctccttgtcctaacatatcccgaaaattatttgtgattctcttaatttctacataagagtatctggttggctt |
199 |
Q |
| |
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||||| ||||||| ||||| ||||||| |||||| ||||| ||| ||||||||||||||||| || || |||| ||| ||||||||||||| |
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| T |
9171329 |
cctttgtaaacagctccatgagctccttcgcctaacttatccttaaatttatttgtgattctctttatgtcagcataggagaatctggttggctt |
9171235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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