View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_26 (Length: 293)
Name: NF16244_low_26
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 1452269 - 1452548
Alignment:
| Q |
1 |
agagagagagataaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgc |
100 |
Q |
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| T |
1452269 |
agagagagagataaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgc |
1452368 |
T |
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| Q |
101 |
tccgttcggttaggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaa |
200 |
Q |
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| T |
1452369 |
tccgttcggttaggttgaatggcgtcaggcagtgacagttacgttccaaacgatcatttttaagaggggaaccattgttattaatatattatggactaaa |
1452468 |
T |
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| Q |
201 |
ttgatcgatgtattttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatat |
280 |
Q |
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| T |
1452469 |
ttgatcgatgtattttctaatactttatggactaaattgatgaatttctgtactttaagtattagttattatatttatat |
1452548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 1453751 - 1453829
Alignment:
| Q |
161 |
taagaggggaaccattgttattaatatattatggactaaattgatcgatgtattttctaatactttatggactaaattga |
240 |
Q |
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| T |
1453751 |
taagagggggatcattgttattaagatattatggaccaaattgat-aatcgattttctaatactttatggactaaattga |
1453829 |
T |
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