View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16244_low_28 (Length: 275)
Name: NF16244_low_28
Description: NF16244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16244_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 38110633 - 38110865
Alignment:
| Q |
19 |
agacaatccctctatcgccatatatagagctaattcaacaagtatatgatacctaacaccaaaaagaaagtatgatatgatatgatatgataccttacct |
118 |
Q |
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| T |
38110633 |
agacaatacctctatcgccata----gagctaattcaagaagtatatgatacctaacaccaaaaagaaagtatg----------atatgataccttacct |
38110718 |
T |
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| Q |
119 |
taacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38110719 |
taacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatattt |
38110818 |
T |
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| Q |
219 |
atgttttcctcccaaagcattccaattattcaccaagccaagtataa |
265 |
Q |
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| T |
38110819 |
atgttttcctcccaaagcattccaattattcaccaagccaagtataa |
38110865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 38085615 - 38085766
Alignment:
| Q |
114 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
213 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || ||||||||||||| ||||||| || ||| |
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| T |
38085615 |
taccttaacatgatttttgtagtattgcttaacaacggggtgtgtaaagaagtcatcatcgtttttgatattttgaccacgttcttttgcccactgcaca |
38085714 |
T |
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| Q |
214 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
265 |
Q |
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| T |
38085715 |
tatttgttcttgcctccaaaatcattccaattattcaccaagctaagtataa |
38085766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 38142280 - 38142431
Alignment:
| Q |
114 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
213 |
Q |
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||||||||||| ||||||||||||||||||||||| |||| ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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| T |
38142280 |
taccttaacattgtttttgtagtattgcttaacaagaggattaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38142379 |
T |
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| Q |
214 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
265 |
Q |
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||||| | ||| ||||| ||| |||||||||||||||| |||| ||||||| |
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| T |
38142380 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataa |
38142431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 265
Target Start/End: Original strand, 38155626 - 38155777
Alignment:
| Q |
114 |
taccttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtaca |
213 |
Q |
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||||||||||| ||||||||||||||||||||||| || | ||||||||||||| || ||||||||| ||||||||||||||||||||| || ||| |
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| T |
38155626 |
taccttaacattgtttttgtagtattgcttaacaagagggttaataaagaagtcatcttcaattttgacattttgaccacgttctcttgcccactgcaca |
38155725 |
T |
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| Q |
214 |
tatttatgttttcctcccaaagcattccaattattcaccaagccaagtataa |
265 |
Q |
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||||| | ||| ||||| ||| |||||||||||||||| |||| ||||||| |
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|
| T |
38155726 |
tatttctttttgcctccaaaatcattccaattattcactaagctcagtataa |
38155777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 248
Target Start/End: Original strand, 38090602 - 38090732
Alignment:
| Q |
118 |
ttaacatggtttttgtagtattgcttaacaacgggatgtgtaaagaagtcatcgtcgcttttgacatgttgaccacgttctcttgcccattgtacatatt |
217 |
Q |
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|||||||| |||||||||||||||||||||| || |||||||||||||| ||||| |||| | | ||||| |||||||||||||||| ||||||| |
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| T |
38090602 |
ttaacatgatttttgtagtattgcttaacaagagggtgtgtaaagaagtcgtcgtcattttttatgttatgaccgtgttctcttgcccattgaacatatt |
38090701 |
T |
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| Q |
218 |
tatgttttcctcccaaagcattccaattatt |
248 |
Q |
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| T |
38090702 |
tgtttttgcctccaaaattattccaattatt |
38090732 |
T |
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